Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00395 ATGTCAAGAGAAGGAATGATACACCCAGATTGCAGAAATGCTTCAAATCCTTACCATAAGTGTAGTGAATATTGTTTTAGAATAATTGCTGAATCTAAGTCTCAAATTCAGATGGTGCAAAAGGAATCAGCTCCAGCTTCTGGGGAACATGATGGTCCTTCCACCTCTGGACCTCCTGATGAGTATGAAGATCTACATGATGAAAAACCACATTCAGAAGGAAATTCTGATGATTATAATGGGAAATTGAATGGAGAAGCTCTGGAAGGCGAGTTTACAAAACTTACAGGAAGGAAGAAAAAATTGTTTGAACTGAGGCTTAAAATGAACGAAGCTAGGAAAGCTAATCAAACTGCAATAGCAGCTGAAAAGCAAAAAATGGAAGTTCCATTGGAGTCGAGGGGCATCTCAAAACAAAAGTGGCTTGATGAGAGGAAGAAAAAGATTGGGAAACTTTTGGACGCAAATGGTTTGGACATGACAAAGGCTTACATGCTAGACACGCAAGATGCAGCAGAGGCAAAATATAAGAAATGGGATAAGGATCCGGCTCCATATGGCTGGGATGGGAATACTGCCACTGGAGCAATTGCTGGAGGAGTTGCTGCCGCTGCTGCCTTGCTTTTTGCTATCCCTGCAATTGCACTTGCTTTGTGGCGTCGACGAAGACCACACGACCACTTCTTTGATGTACCTGCTGAGGAGGATCCAGAAGTTCATCTTGGCCAGCTCAAAAGGTTTTCTCTGCGGGAGCTACAAGTCGCCACTGACTACTTCAGCAATAAACATGTTTTGGGTAGAGGTGGCTTTGGCAAGGTGTACAAAGGCCGTTTGGCCGATGGTACTCTGGTAGCAGTCAAAAGACTTAAAGAGGAGCGTACCCAGGGTGGAGAGCTGCAATTCCAAACTGAAGTAGAGATGATCAGCATGGCTGTGCATCGCAATCTGCTACGATTACGTGGTTTCTGCATGACACCAACCGAGCGGTTGCTTGTTTATCCTTACATGGCTAATGGGAGTGTAGCGTCATGTCTAAGAGAGCGCCCAGAAACACAGCAACCACTTAATTGGTCAATACGCAAACACATTGCTCTTGGCGCTGCTAGGGGTCTTTCTTACTTACATGATCATTGCGATCCGAAGATTATTCACCGAGATGTAAAAGCTGCAAATATTTTATTGGATGAAGAATTTGAAGCTGTTGTAGGGGATTTTGGGCTGGCTAAGCTCATGGACTATAAAGATACTCATGTCACAACTGCAGTGCGTGGTACTATTGGACACATAGCACCAGAATACCTTTCAACTGGAAAATCTTCAGAGAAGACAGATTGTTTCGGATATGGAGTGATGCTTCTTGAACTCATAACTGGACAGAGAGCTTTTGATCTTGCCCGCCTTGCAAATGATGATGATGTCATGTTACTTGATTGGGTGAAAGGGCTTCTGAAAGACAAGAAGCTGGAGACTCTTGTGGATCCCGACCTTCAAGGAAATTATGTGGAGGCAGAGGTGGAGGAGCTCATTCAAGTCGCACTACTTTGCACCCAAAACTCTCCCATAGAGCGTCCGAAAATGTCAGAGGTCGTGAGGATGCTCGAAGGTGATGGCTTGGCAGAAAGATGGGAAGAGTGGGAGAAAGAGGATCGGTTTGTCAACGACTTTAACCGGACTCAACCCCCCCACCCAAGTATGACTTGGATCGTTGACTCGACATCTAACATTCCTCCCGATGACTTATCCGGCCCAAGGTGA 1755 45.13 MSREGMIHPDCRNASNPYHKCSEYCFRIIAESKSQIQMVQKESAPASGEHDGPSTSGPPDEYEDLHDEKPHSEGNSDDYNGKLNGEALEGEFTKLTGRKKKLFELRLKMNEARKANQTAIAAEKQKMEVPLESRGISKQKWLDERKKKIGKLLDANGLDMTKAYMLDTQDAAEAKYKKWDKDPAPYGWDGNTATGAIAGGVAAAAALLFAIPAIALALWRRRRPHDHFFDVPAEEDPEVHLGQLKRFSLRELQVATDYFSNKHVLGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPETQQPLNWSIRKHIALGAARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDCFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKDKKLETLVDPDLQGNYVEAEVEELIQVALLCTQNSPIERPKMSEVVRMLEGDGLAERWEEWEKEDRFVNDFNRTQPPHPSMTWIVDSTSNIPPDDLSGPR 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8275186 8285674 - Bma007360.1 Bma12g00395 91821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00395 584 SMART serkin_6 259 533 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma12g00395 584 Gene3D Transferase(Phosphotransferase) domain 1 336 553 - -
Bma12g00395 584 MobiDBLite consensus disorder prediction 562 578 - -
Bma12g00395 584 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 192 584 - -
Bma12g00395 584 MobiDBLite consensus disorder prediction 562 584 - -
Bma12g00395 584 ProSitePatterns Protein kinases ATP-binding region signature. 265 287 IPR017441 GO:0005524
Bma12g00395 584 PANTHER LRR RECEPTOR KINASE SERK2 192 584 - -
Bma12g00395 584 ProSiteProfiles Protein kinase domain profile. 259 546 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma12g00395 584 MobiDBLite consensus disorder prediction 36 84 - -
Bma12g00395 584 Pfam Protein kinase domain 260 531 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma12g00395 584 SUPERFAMILY Protein kinase-like (PK-like) 238 534 IPR011009 -
Bma12g00395 584 Gene3D Phosphorylase Kinase; domain 1 228 335 - -
Bma12g00395 584 ProSitePatterns Serine/Threonine protein kinases active-site signature. 382 394 IPR008271 GO:0004672|GO:0006468
Bma12g00395 584 MobiDBLite consensus disorder prediction 56 76 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00998 Bma-Chr3:10880338 Bma12g00395 Bma-Chr12:8275186 3.06E-88 transposed
Bma12g00378 Bma-Chr12:7224813 Bma12g00395 Bma-Chr12:8275186 2.83E-128 transposed
Bma12g00395 Bma-Chr12:8275186 Bma05g00578 Bma-Chr5:33676537 6.71E-110 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66812 PF00069 Pkinase 7.90E-45 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00395 K13416 - rcu:8277786 687.182