Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00402 ATGTCATTCCGTAGCCTTGTGCGTGATGTAAGGGATAGTATCGGAAGCTTATCCCGGCGAGGATTCGACATCAGACTGTCCGGTCATAGCTGCGGAAAATCGGACGGGTCACAAGGTGATTTGCAAGATCCGCTTGTGGGTCAAAGCAGTTGTTGGGCCAACCTCCCTCCCGAGCTCCTTTACGATGTAATTAGGAGGCTGGAGGAGAGTGAAAGCACATGGCCCGCCAGAAAGCATGTCATCGCCTGTGCTGCCGTTTGCCGTTCTTGGAGAAACACTTGCAAAGAATTAGTTAAAAATCCTGAATTTTGTGGAAAGCTTACCTTTCCTGTGTCCCTAAAGCAGCCGGGGCCACGAGACGGAACAATCCAGTGCTTCATTAAAAGGGACAAGTCGAATTTAACTTACCACCTTTATCTATCTTTGTTAGTAGAAAATGGGAAATTTCTTCTTTCTGCAAAACGGACACGAAGAACAACTAGCACCGAGTATGTTATCTCGATGGATGCCGAGAACATCTCAAGATCGAGTAGCAGCTACATTGGAAAACTAAGATCAAATTTTCTTGGTACAAAGTTCATCATTTACGACACGCAACCTCCATACACAGCTGCCTCCAATCCTACTCCCGGTAAAACAAGTCGAAGATTCAACTCCAAAAAGGTGTCCCCAAAAGTCCCAAGCGGGAGCTACAATATCGCCCAATTGGCTTACGAACTAAACGTGTTGGGCACACGGGGCCCACGGAGAATGCATTGTGTGATGCATTCAATCCCACTCTCGTCTCTCGATGCTGGTGGGTCCGTCCCCGGCCAGCCGGAGCTCCTTCCACGCCCACTCGAAGACTCCTTCCGGAGCATATCCTTCTCAAAATTTCTCGATTACTCTATGGAGTTCAGCAGCTCGAGGTTTTCCGAAATCAGCAGACGCCTCGACAGTGAGGGGGAGGAAAAGATGATGATGCCCTTGGTCCTGAAAAACAAGCCGCCAAGGTGGCACGAGCAATTGCAGTGCTGGTGTTTGAATTTCCGAGGGCGGGTAACTGTTGCTTCCGTGAAGAACTTTCAGCTAATTGCAGGCACACAACCAGGGGCTGGAGCTCCAACGCCTTCTCAACCGACCCCGCCTGATCATGATAAGATAATTCTTCAGTTTGGGAAAGTCGGCAAAGACATGTTTACGATGGATTATCGTTATCCGTTATCGGCTTTTCAGGCTTTTGCCATTTGCTTGAGCAGCTTTGACACCAAATTGGCTTGTGAATAG 1266 48.58 MSFRSLVRDVRDSIGSLSRRGFDIRLSGHSCGKSDGSQGDLQDPLVGQSSCWANLPPELLYDVIRRLEESESTWPARKHVIACAAVCRSWRNTCKELVKNPEFCGKLTFPVSLKQPGPRDGTIQCFIKRDKSNLTYHLYLSLLVENGKFLLSAKRTRRTTSTEYVISMDAENISRSSSSYIGKLRSNFLGTKFIIYDTQPPYTAASNPTPGKTSRRFNSKKVSPKVPSGSYNIAQLAYELNVLGTRGPRRMHCVMHSIPLSSLDAGGSVPGQPELLPRPLEDSFRSISFSKFLDYSMEFSSSRFSEISRRLDSEGEEKMMMPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAGTQPGAGAPTPSQPTPPDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8538269 8539970 + Bma007369.1 Bma12g00402 91828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00402 421 Gene3D - 48 100 - -
Bma12g00402 421 Gene3D Tubby Protein; Chain A 109 421 IPR025659 -
Bma12g00402 421 SUPERFAMILY Tubby C-terminal domain-like 101 421 IPR025659 -
Bma12g00402 421 ProSitePatterns Tub family signature 2. 406 421 IPR018066 -
Bma12g00402 421 MobiDBLite consensus disorder prediction 204 223 - -
Bma12g00402 421 Pfam Tub family 113 416 IPR000007 -
Bma12g00402 421 ProSitePatterns Tub family signature 1. 343 356 IPR018066 -
Bma12g00402 421 SUPERFAMILY F-box domain 47 96 IPR036047 GO:0005515
Bma12g00402 421 Pfam F-box domain 52 99 IPR001810 GO:0005515
Bma12g00402 421 PRINTS Tubby superfamily signature 180 204 IPR000007 -
Bma12g00402 421 PRINTS Tubby superfamily signature 325 342 IPR000007 -
Bma12g00402 421 PRINTS Tubby superfamily signature 164 180 IPR000007 -
Bma12g00402 421 PRINTS Tubby superfamily signature 343 359 IPR000007 -
Bma12g00402 421 PRINTS Tubby superfamily signature 399 421 IPR000007 -
Bma12g00402 421 PRINTS Tubby superfamily signature 378 397 IPR000007 -
Bma12g00402 421 PRINTS Tubby superfamily signature 230 257 IPR000007 -
Bma12g00402 421 PANTHER TUBBY-RELATED 1 421 - -
Bma12g00402 421 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 1 421 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g00381 Bma-Chr12:7436285 Bma12g00402 Bma-Chr12:8538269 0 dispersed
Bma12g00402 Bma-Chr12:8538269 Bma12g01166 Bma-Chr12:44318478 0 dispersed
Bma13g00928 Bma-Chr13:39771682 Bma12g00402 Bma-Chr12:8538269 7.14E-124 dispersed
Bma12g00402 Bma-Chr12:8538269 Bma05g00585 Bma-Chr5:34169253 0 wgd
Bma12g00402 Bma-Chr12:8538269 Bma05g00558 Bma-Chr5:31534520 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58106 PF01167 Tub 2.60E-116 CL0395 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00402 K19600 - jre:109007061 707.212