Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00417 ATGTCTGCTTTTGGAGCTTCTTCTACTCCTGCTTTTGGTAGTTCATCATCAGCATTTGGAGGGTCGTCTGTTTTTGGGCAAAAGCCTGTTTTTGGAGGCTTCGGATCTAGTCCTACACAAACAAGTCCTTTTGGGAGTACAGGTCAACAATCTCAGCCTGCATTTGGTAGCAGTTTATTTGGTTCATCATCACCTTTTGGTGCAACCTCACAGTCTCCATTTGGTTCGACGAGCACTCCTGCCTTTGGTTCAACAAGTATCCCAGGATTTGGTGCCACAAGTACACCTGCATTTGGTTCTACAAGCAACCCAGTCTTTGGGGCTACAAGTTCTCCAGCCTTTGGTGCTGCAAGCACTCCTGCCTTTGGTTCTACATCTACTTTACCATTTGGCAGCACAGGAAGTGCATTTGGGGTGTCAAGTGCCCCTGCTTTTGGATCCGGAGGAGCATTTGGTGCCTCAAACTCTCCTGTTTTCGGATCCCCAAGTACTTCAGCATTTGGAGTCTCAAATACACCTGCTTTTGGAGCATCGACCTCTGCCTTTGGGGCATCTAGTAGTCCTGTTTTTGGAGCTTCTAGTACTCCGAGCTTCAGTTTCGGGTCTAGCGCAGCTTTTGGCCAGTCCACTTCTACATTTGGTAGCAATGTGTTCGGTTCTACTTCAACTCCCTTCGGAACCCAGAGGGCTCAATCTACTACTCCAACATTTGTGAGCACTACTTTTGGTCAGCAAGCTTTTGGCAGTCAACGTGGTGGCACAAGAATAGCTGCTTACACTCCAACAACTGAGCCAGATAGCGGCAGTGGCTCACAAGGGGCAGGGAAGTTAGAGTCGATATCAGCTATGCCAATTTACAAAGATAAATGCCACGAGGAGTTGAGATGGGAGGATTATCAATTGGGAGACAAAGGTGGTCCACTTCCTGCTGGCCAGTCAACAGCACCGGTTGGCTTTAATGTATCAACTCCATCACAGCCAAACCTTTTGACTCCTACATTTGGCCAAGCGACTGCTACATTTGGTCAAGCACCTGCTAATCCTTTCTCAACTCCTACGACCTCCAATCCATTTGCTCCAAAACCTTCAGCTTTTGGAACACCATCAACTTTTTCTTTTAGTTCTTCAGCTTTTGCTCCTTCCACCTCTTCCAATCCTTTTGGATCAGCAGTATCACCATCAACGTCATCGTTTATATCAACATCTGCTGCGCCATTTGGGAGCTCTCCTTCCTTCTTTAATTCATCTAGTACACCTGCTTTTGGGTCTCAGCCTGCCTTTGGATCTGCTACTACCGCCGGAAGTATGCCATCATTTGGTTCAAGCATCAATTTTGGTAACACCCAGCCATCCTCCTTGTTCCCATCAACTACACCAACACTTGGGCAGACTGGTTCCGCATTCAGGCCAAGTACTTCTGCCTTTGGACCAAGTACCACTTCATTTAGCCATTCAAGCTTGTTTAACCAACCTTCCTCTGTGTTTGGTGGCAACCTTTTTTCGAGCACACCATCTCTTATGCCTTTAAGCACTCCTACTTATGGTCAATTATCTTCCACTCTTTCTACACCTTTTCAACCAGCTCAAACGCAGCCAATTGGTGCATTTGGTTTTGGAAACTTTGGTCAGGCACAACCAGGTGGTATAAGTGGTGTTGGTGGTACATCAAATATCTTTGGACAGAATGGCTTTGGGCATTTGTCTGCTAATCATACTTCTGTGGTTGCCCAATCTCCTCCCGTTACTAATCCATTTGGAACACTCCCTGGGATGCCAAAAATGACAATTGGCCGAGCAGGAAATGCTTCTTTAATTCAATATGGTATTTCGAGCATGCCTGTTGTTGACAAACCTTCTCCTTTGAAAATATCATCCTTGTTGACTTCTCGACCTCTGTCACAAAGGCGGATTAGGTTGTCTGCCAGAAAATATCATCCTAAAAATGATGGTTTAAAGGTTCCATTTTTCAGTGAAGATGAAGAAACTCCCAGCACCCCGAAAGCAGATGCTCTTTTTGTGCCAAGAGAGAACCCTAGGGCACTTGTCATTCGCCCAGCAGAACACTGGCCTGCAAAAGCTAGTGCAGAGAAAGCTTCTTTGACAATGAATACGTCTGGATTACGTGTGAATGGAAATTCTGCAAAAGATGGTCCAGAAAAGGAGCCCGATCAGCATAATACAGTCAACCAGAAAACAAATGGGTTCCATGAGCACAATAATAATCAAAAAGGGGAGACGTATAAGACTCTCAGTGGCCATCGAGCGGGTGAGGCAGCCATTGCTTACGAACATGGCGCTGATATTGAGGCATTAATGCCGAAGCTCCGACATGCTGAGTACTATACAGTGCCTAAAATACAAGAATTAGCAGCCAAGGAAAGGGCCGAACCTGGTTTTTGCCGCCATGTGAAGGACTTTGTGGTTGGCCGTCATGGCTTTGGGAGCATAAAATTCATGGGTGAGACAGATGTAAGACGGATCGATCTAGAGTCACTTGTCCAGTTTAACAACCGTGAAGTGATTGTCTACATGGACGACAGCAAGAAACCCCCAGTAGGACAAGGTCTCAATAAACCGGCTGAGGTAACACTACTCAATATCAAATGCTTTGACAAAAAGACAGGCCGGCAATATACCGAAGGGCCGAAAGTGGAAAAGTATAAGGAGATGTTAAAGAGAAAGGCGGAAGATCAAGGGGCTGAGTTCGTGTCGTATGACTCGGTCAAAGGAGAGTGGAAGTTCAAGGTTAATCACTTCAGCAAGTACAATCTGGAAGATGAGGATGAATTTGGTGAATGGCAATGA 2805 45.88 MSAFGASSTPAFGSSSSAFGGSSVFGQKPVFGGFGSSPTQTSPFGSTGQQSQPAFGSSLFGSSSPFGATSQSPFGSTSTPAFGSTSIPGFGATSTPAFGSTSNPVFGATSSPAFGAASTPAFGSTSTLPFGSTGSAFGVSSAPAFGSGGAFGASNSPVFGSPSTSAFGVSNTPAFGASTSAFGASSSPVFGASSTPSFSFGSSAAFGQSTSTFGSNVFGSTSTPFGTQRAQSTTPTFVSTTFGQQAFGSQRGGTRIAAYTPTTEPDSGSGSQGAGKLESISAMPIYKDKCHEELRWEDYQLGDKGGPLPAGQSTAPVGFNVSTPSQPNLLTPTFGQATATFGQAPANPFSTPTTSNPFAPKPSAFGTPSTFSFSSSAFAPSTSSNPFGSAVSPSTSSFISTSAAPFGSSPSFFNSSSTPAFGSQPAFGSATTAGSMPSFGSSINFGNTQPSSLFPSTTPTLGQTGSAFRPSTSAFGPSTTSFSHSSLFNQPSSVFGGNLFSSTPSLMPLSTPTYGQLSSTLSTPFQPAQTQPIGAFGFGNFGQAQPGGISGVGGTSNIFGQNGFGHLSANHTSVVAQSPPVTNPFGTLPGMPKMTIGRAGNASLIQYGISSMPVVDKPSPLKISSLLTSRPLSQRRIRLSARKYHPKNDGLKVPFFSEDEETPSTPKADALFVPRENPRALVIRPAEHWPAKASAEKASLTMNTSGLRVNGNSAKDGPEKEPDQHNTVNQKTNGFHEHNNNQKGETYKTLSGHRAGEAAIAYEHGADIEALMPKLRHAEYYTVPKIQELAAKERAEPGFCRHVKDFVVGRHGFGSIKFMGETDVRRIDLESLVQFNNREVIVYMDDSKKPPVGQGLNKPAEVTLLNIKCFDKKTGRQYTEGPKVEKYKEMLKRKAEDQGAEFVSYDSVKGEWKFKVNHFSKYNLEDEDEFGEWQ 934
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9384421 9390372 - Bma007395.1 Bma12g00417 91843

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00417 934 Pfam Nucleoporin autopeptidase 778 924 IPR007230 GO:0005643|GO:0006913|GO:0017056
Bma12g00417 934 MobiDBLite consensus disorder prediction 33 79 - -
Bma12g00417 934 MobiDBLite consensus disorder prediction 315 362 - -
Bma12g00417 934 MobiDBLite consensus disorder prediction 30 79 - -
Bma12g00417 934 Gene3D - 252 304 - -
Bma12g00417 934 MobiDBLite consensus disorder prediction 727 747 - -
Bma12g00417 934 PANTHER BNAC05G07920D PROTEIN 3 929 - -
Bma12g00417 934 PANTHER NUCLEOPORIN 3 929 IPR037665 GO:0005643
Bma12g00417 934 MobiDBLite consensus disorder prediction 703 747 - -
Bma12g00417 934 ProSiteProfiles NUP C-terminal domain profile. 777 919 IPR007230 GO:0005643|GO:0006913|GO:0017056
Bma12g00417 934 SUPERFAMILY C-terminal autoproteolytic domain of nucleoporin nup98 770 926 IPR036903 -
Bma12g00417 934 Gene3D Peptidase S59, nucleoporin 774 926 IPR036903 -
Bma12g00417 934 MobiDBLite consensus disorder prediction 257 276 - -
Bma12g00417 934 MobiDBLite consensus disorder prediction 301 362 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00417 K14297 NUP98, ADAR2, NUP116; nuclear pore complex protein Nup98-Nup96 - vvi:100249633 1128.24
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma05g00548 Bma12g00417 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g00746 Bma-Chr12:34300650 Bma12g00417 Bma-Chr12:9384421 2.06E-36 transposed
Bma12g00462 Bma-Chr12:11941429 Bma12g00417 Bma-Chr12:9384421 3.35E-37 transposed
Bma12g00417 Bma-Chr12:9384421 Bma05g00548 Bma-Chr5:29945633 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g291 . . . Bda08g00748 Bpe05g00397 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma05g00548 Bma12g00417 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003607 3 2 2 2 1 1 2 1 1 2 1 1 2 1 1 2 1 2 2 1 2 1 1 1 1 1 1 2 3 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00417 Bma_Chr12 FPKM 17.736111 15.406247 8.67079 8.909061 9.627855 9.457688 15.604568 16.156803 15.888179 15.067927