Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00420 ATGACGATTCCTAGTTCGGCTCCAATGATGGAAGATGGAGGGGCAAGTTGTCTTTCGCATTCTCCCGGGGAAGAGAATCGGATCATTACTGAATTGATTAATGAATCTGAGTCTAAATTGAAGGAAGGAAACTTGTTCTACGTTATTTCCAACAGATGGTTTACAAGGTGGCAGAAGTATGTTGGTCAACGTACTGAGGATTATACAATTGATGATCATTCGTCTGATATGCAAGCAGTGGATATTGTTCCATCAAATTTAGCTGATAGACCTGGACCTATTGATAACTCTGATATTATTTTAGATGGAAAATATTTTGGGAGCAATGACTTAGAGCTTCGCAAGATGCTTGAGGAAGGGCAAGATTATGTTTTAGTTCCTCAATCAGTTTGGAAAAAACTTTTAGAATGGTACACTGGAGGACCAGCTTTACAAAGAAAGTTGGTTTCACAAGGTGTTCACAAAAAATTTATTGTGGAGGCTACTATTGGTGAACTTCTTGAAAACATATCCACACTTAAAGGCATAGAAAGGGAAAAGATGATTTTATGGGACTACTTCAATAAGCAGAGACAGTCAATATTGGATTGTTCAAGCCAAACTCTAGAGGAATCAAACTTACAGATGGATCAAGATATTCTTCTTGAAGTAAAGTTGGAGGGATTTTTGTCTCAGAATTCTATGGATTCAACAGGAAATGAGTTAGCACTGGTAGCCATAGAGCCTTCCCGGTCATCTTTGTCAATTGCAGGGGGACCTACCATGTCAAATGGTCATTTAACTGGTTTTGGTTTATATGAAGGAAATTCTATTAGTTCATCAGTTACTGCCACAGATGATTTAAGTGATCATGTGATGAAGAAGGAAAAGGGTGGGTTGGCAGGGTTGCAGAATCTGGGGAATACCTGTTTCATGAACAGTGCAATTCAATGTTTAGTCCACACGCCTCCTATTGTAGAGTATTTCTTGCAAGATTACTCTGAGGAGATCAATGTTAAAAATCCATTGGGAATGCGTGGTGAGCTTGCTCTTGCATTTGGTGAATTGTTGAGGAAATTATGGTCCTCTGGACGAACTGCGATTGCTCCACGTGTATTTAAAGGAAAACTAGCTCGGTTTGCTCCCCAATTTAGTGGTTACAACCAGCATGATTCTCAAGAACTCCTCGCCTTCTTGTTGGATGGACTGCATGAAGATTTGAACCGTGTGAAACAAAAACCTTATTTTGAAACAAAGGATTATGATGGTCGTGCAGATGAGGAGATTGCTGATGAGTGTTGGAGATACCACAAAGCACGGAATGATTCATTGATTGTTGATGTTTGCCAAGGTCAATATAAATCAACACTTGTTTGTCCATTATGTGGCAAAATCTCAATCACCTTTGATCCATTTATGTACTTATCATTGCCACTACCATCAGCTATGACTCGCTCTATGACAGTGACCATATTTTATGGAGATGGTAGTGGTCTTCCAATGCCATACACTGTGACGGTACCAAAACATGGTTGTTGTAAAGATCTAACCGTAGCACTTGGTGGGGCTTGTTGCTTGAAAAATGATGAATGCCTTCTGCTTGCAGAGATTTATGATTGCTGTGTTTATCGATATTTTGACAACCCTTTGGAATTGCTGACTTCCATAAAAGATGAAGAACATATTGTAGCCTATCGCTTCTCTGAAAGGGATGTGAAAAGAGCAAAACTAGAGATTATTCATCGATTGCTGGACAAAAGTTCATCAGAACGATTGAAGGGTTCCGAGCGAAAGCTTTTTGGAACTCCACTCGTCACTTTTTTGGGAGAAGAGCCTCTTGGGGCTGCTGATATGAATGCAGTTGTCTCCAAAATTCTCTCTCCTTTGAGAAAAACTTATTCTATGAACAAAACTCATAGCGGAAAGGAAAATGGCTTTGTTTCAGAGATGGTTATTGAACCTTCAACCATCTGCAATGGTCAAACGGGTCTGAAGAATCAGTCAACTGGCGAAAATGACATAGAGGATACGGCCAATGGAGAATTGTCTTTTGAACTTGTTTTGACCGATGAAAAGGGTTTGGGGGCCAAGCCTATAGCAAAGGACTCTCTTGTGAAACCTGCTAGGCTGGTAAAGGTTTTTTTAGACTGGACGGATAAAGAAAATGAATTGTATGATGCAAGTTACCTCAAGGATCTTCCAGTTGTCCATCAGACACGGTCTATGAAGAAAACACGGCAAGAAGCTGTCTCATTATTTTCATGCTTGGAGGCATTCCTCACTGAAGAACCTTTGGGTCCTCATGACATGTGGTACTGTCCTAGGTGCAAAGACCATAGGCAAGCTTCTAAGAAGCTAGACTTGTGGAAGTTGCCAGAGATTATTGTTTTTCACTTGAAACGATTCTCATTCAGCAGATATCAGAAAAACAAGCTCGACACTTTTGTTGATTTTCCCATTCACAATCTTGATCTAAGCAAATATGTGAAAAGCAAAGACGGAACATCCCATGTGTATGAGCTTTATGCTATCAGCAACCATTATGGTGGTCTAGGTGGCGGACATTACACTGCATATGCCAAGATAATTGATGAGAACCGATGGTATCATTTCGACGACAGTCATGTTTCTGTTGTTGGCGAATCCGAAATCAAAACGTCAGCTGCTTACTTGCTGTTTTATCAAAGAGTGAACAAAACGCAGGCAGCTATACGGGGGGCATCAGAGACAAATGGACTTTAA 2721 40.28 MTIPSSAPMMEDGGASCLSHSPGEENRIITELINESESKLKEGNLFYVISNRWFTRWQKYVGQRTEDYTIDDHSSDMQAVDIVPSNLADRPGPIDNSDIILDGKYFGSNDLELRKMLEEGQDYVLVPQSVWKKLLEWYTGGPALQRKLVSQGVHKKFIVEATIGELLENISTLKGIEREKMILWDYFNKQRQSILDCSSQTLEESNLQMDQDILLEVKLEGFLSQNSMDSTGNELALVAIEPSRSSLSIAGGPTMSNGHLTGFGLYEGNSISSSVTATDDLSDHVMKKEKGGLAGLQNLGNTCFMNSAIQCLVHTPPIVEYFLQDYSEEINVKNPLGMRGELALAFGELLRKLWSSGRTAIAPRVFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYFETKDYDGRADEEIADECWRYHKARNDSLIVDVCQGQYKSTLVCPLCGKISITFDPFMYLSLPLPSAMTRSMTVTIFYGDGSGLPMPYTVTVPKHGCCKDLTVALGGACCLKNDECLLLAEIYDCCVYRYFDNPLELLTSIKDEEHIVAYRFSERDVKRAKLEIIHRLLDKSSSERLKGSERKLFGTPLVTFLGEEPLGAADMNAVVSKILSPLRKTYSMNKTHSGKENGFVSEMVIEPSTICNGQTGLKNQSTGENDIEDTANGELSFELVLTDEKGLGAKPIAKDSLVKPARLVKVFLDWTDKENELYDASYLKDLPVVHQTRSMKKTRQEAVSLFSCLEAFLTEEPLGPHDMWYCPRCKDHRQASKKLDLWKLPEIIVFHLKRFSFSRYQKNKLDTFVDFPIHNLDLSKYVKSKDGTSHVYELYAISNHYGGLGGGHYTAYAKIIDENRWYHFDDSHVSVVGESEIKTSAAYLLFYQRVNKTQAAIRGASETNGL 906
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9459698 9471084 - Bma007401.1 Bma12g00420 91846

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00420 906 CDD Peptidase_C19R 735 888 - -
Bma12g00420 906 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 832 849 IPR018200 GO:0004843|GO:0006511
Bma12g00420 906 SMART dusp 39 152 IPR006615 GO:0004843
Bma12g00420 906 Pfam Ubiquitin carboxyl-terminal hydrolase 295 887 IPR001394 GO:0004843|GO:0016579
Bma12g00420 906 SUPERFAMILY Cysteine proteinases 292 890 IPR038765 -
Bma12g00420 906 ProSiteProfiles DUSP domain profile. 20 149 IPR006615 GO:0004843
Bma12g00420 906 Pfam DUSP domain 44 149 IPR006615 GO:0004843
Bma12g00420 906 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 10-RELATED 176 893 - -
Bma12g00420 906 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 10-RELATED 18 156 - -
Bma12g00420 906 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 294 890 IPR028889 -
Bma12g00420 906 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 176 893 - -
Bma12g00420 906 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 18 156 - -
Bma12g00420 906 Gene3D Cysteine proteinases 277 486 - -
Bma12g00420 906 Gene3D - 19 148 IPR035927 -
Bma12g00420 906 MobiDBLite consensus disorder prediction 1 21 - -
Bma12g00420 906 SUPERFAMILY DUSP-like 23 149 IPR035927 -
Bma12g00420 906 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 295 310 IPR018200 GO:0004843|GO:0006511
Bma12g00420 906 Gene3D - 149 221 - -
Bma12g00420 906 Gene3D Cysteine proteinases 709 898 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00420 - - - mcha:111023427 1321.99
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma05g00539 Bma12g00420 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma09g00418 Bma-Chr9:34893807 Bma12g00420 Bma-Chr12:9459698 1.17E-08 dispersed
Bma10g00244 Bma-Chr10:2214556 Bma12g00420 Bma-Chr12:9459698 0 dispersed
Bma11g00255 Bma-Chr11:2237480 Bma12g00420 Bma-Chr12:9459698 0 dispersed
Bma12g00420 Bma-Chr12:9459698 Bma05g00260 Bma-Chr5:7245504 1.36E-25 dispersed
Bma12g00420 Bma-Chr12:9459698 Bma05g00539 Bma-Chr5:29051357 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g257 . . . Bda08g00751 Bpe05g00390 . . . Cmo06g00541 . Cma02g00946 Cma15g01323 Car02g00695 Car15g01188 . . Cpe05g00767 . . . . . . . . . . . . . . . . . . . Csa05g00158 Chy09g01340 . . . . . . . Bma05g00539 Bma12g00420 . Cmo02g00955 Cmo15g01386 Cma06g00538 . Car06g00476 . Cpe08g00954 . Bhi12g00079 . . . . . Lcy12g1510 Cla01g00140 Cam01g0145 . . Clacu01g0140 Cmu01g0140 Cre09g2366 Lsi09g00131 . . Cme09g01887
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005583 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00420 Bma_Chr12 FPKM 43.55106 41.408035 37.949722 33.917637 44.435471 56.508934 46.118549 48.653389 52.085873 42.4874