Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00421 ATGGGAAACTGCCTGTTTGGGGGGCTGGAAAACATCAATGGAACAATCAAAGTGATCACATCCAACGGTGGGATCATGGAGTTTTACGCGCCAATAACAGTAGGATCCATCACCGACGAGTTCCCCGGCCACAGCATATTTAACAGAAATGATCTTTTTTGGAATCCGCTTTCTAACCATGAAGAGCTTTTTCCAGGAAAATCTTACTACATACTCCCTCTCACCAACCAGACCGACCCATCCGGCCGTCGAATCCGAGAAGGTCACGTCAGATCAAACAGCTTACCGGAATCTACCTTCGCTCCATACAGGATGTCGTTGGATCACGGAAGACTGATAAAGAGGTCCTACGGAGAAGCATTTTCAAGAGAAAACAAGAGCAGCGGGATTTGGAAAGTGAAGCTGGTCATTACTCCCAAGCAGCTTGTGGAGATATTGGAGGAGGAGGGCTCCAGGGAAGAACTGATTCAGAGCGTCAGGACGGTGGCCAAGTGTGGAAGCTTCGTCGGATATTCTGATCAATGGAGTCTTTCAAGCTGTAGCAGCAGGAATGCTTCCTCTAAAAATGATGCCCTGCTAGACATTTAG 588 47.79 MGNCLFGGLENINGTIKVITSNGGIMEFYAPITVGSITDEFPGHSIFNRNDLFWNPLSNHEELFPGKSYYILPLTNQTDPSGRRIREGHVRSNSLPESTFAPYRMSLDHGRLIKRSYGEAFSRENKSSGIWKVKLVITPKQLVEILEEEGSREELIQSVRTVAKCGSFVGYSDQWSLSSCSSRNASSKNDALLDI 195
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9640714 9641301 - Bma007407.1 Bma12g00421 91847

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00421 195 Pfam PADRE domain 1 153 IPR025322 -
Bma12g00421 195 PANTHER PLASTID MOVEMENT IMPAIRED PROTEIN-RELATED 1 182 - -
Bma12g00421 195 PANTHER DUF4228 DOMAIN PROTEIN 1 182 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00421 - - - pvy:116117222 245.358
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma05g00535 Bma12g00421 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g01351 Bma-Chr6:50416479 Bma12g00421 Bma-Chr12:9640714 4.49E-42 dispersed
Bma12g00421 Bma-Chr12:9640714 Bma15g00033 Bma-Chr15:394255 2.18E-09 dispersed
Bma12g00617 Bma-Chr12:27455529 Bma12g00421 Bma-Chr12:9640714 2.00E-17 transposed
Bma12g00421 Bma-Chr12:9640714 Bma05g00535 Bma-Chr5:28213022 3.01E-99 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g253 . . Bda06g01087 Bda08g00753 Bpe05g00385 . . . . Cmo16g00658 . . . . . Cpe14g00513 . . . . . . . . Cla07g00788 Cam07g0851 Cec07g0904 Cco07g0886 Clacu07g0826 Cmu07g0829 Cre07g1187 Cone8ag0557 Cone12ag0556 . . . . . Cme07g01643 . . . . . . Bma05g00535 Bma12g00421 . . . . Cma16g00604 . . . . . . . . . . . . . . . . . . . Csa04g00584 Chy07g01227 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006548 2 1 1 2 2 1 2 1 1 1 1 1 2 1 0 1 1 2 2 1 1 1 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00421 Bma_Chr12 FPKM 23.596685 16.139008 17.948137 18.431921 19.912966 12.750936 19.202211 18.761518 18.634884 15.350933