Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00433 ATGGAAATCGCTCCGGCGTCTCGTCCGTCGCTCGAGGGCGATGGCGTGAACGATTCCGTTTCTGTGGATAGCGCCTCCGTCCGGGACGCTTCATCGCCGTCGTCGTCGTACTCTGCGACTTCTATGTCGCCGGATGAGTCAAGAGAAAGCGAAGGAAAAGCGTCTATGTTGTCTTCAGAGGCGGCGAGGTATGAGGATGATGAGGAGGAGGAGGACGTGTGTCGGATCTGTAGAAATCCGGGAGATGCCGAAAATCCGCTTAGATACCCGTGCGCTTGCAGTGGTAGCATCAAGTTTGTGCATCAGGATTGTCTTCTTCAGTGGCTTAATCACAGCAACGCTCGCCAATGCGAGGTTTGCAAACATGCGTTTTCTTTTTCGCCTGTTTATGCTGCTAATGCGCCAACAAGGCTTCCTTTTCAGGAGTTTATTGTTGGGATGACAATGAAAGCTTGCCATGTCGTGCAATTCTTTTTGCGCCTAAGTTTTGTTCTGGCTAGCAATATGATATTCCTTGGTGTAGTTATCTTTGTGCCATTTTCATTAGGCCGCATCATACTGTACTATGTATCATGGCTTTTCTCTCCTGTTAGTGATCTTGTACTGTCTACAGCAATGCCAATTACAGAGTCAGCCCTTGCCTTGGCCAATATTACATTAAAAAATGCATTGACTGCTGTTGAAAATTTGTCATCAGACAGCCAAGAAAATGGTCTTCTAGGCCAAGCTGCAGAAATGTTGAAGCTAAACTCAAGTGCAGTGAATGACGCATCATACAATATGACTACTGCAATTTCAGCAGATCTATTGAAAGGGACCATTATTGGAACATCACGGTTTTCAGATCTTACAACGCTAGCAATAGGTTATTTATTCATATTTTCTTTTGTTGTCATATATCTTGGTGTTGTAACTTTGATCAGATACACAAAGGGAGAGCCTTTATCAGTGGGTAGATTATATGGTATTGCATCTATAGCAGAGATAGTTCCCTCTCTCATTAGGCAGTTCTTGGTGGCAATGAGGCATTTGATGACCATGATTAAGGTTTCTTTCCTTTTAGTGATTGAACTTGGGGTATTTCCTTTGATGTGTGGATGGTGGCTAGATGTCTGCACTATAAGAATGTTTGGAAAGACGATGGTTCAGAGGGTTCAGTTTTTCTCAGCTTCCCCTTTGTCAAGCTCATTGGTTCACTGGGTTGTTGGTATTGTATATATGCTACAAATAAGTATATTTGTTAGCCTTCTTCGAGGGGTTTTGCGCAGTGGGGTTTTGTACTTTTTACGAGATCCGGCCGACCCAAACTACAATCCATTTCGTGATCTGATTGATGATCCTGTGCACAAGCATGCTCGTAGAGTTTTGTTATCTGTTGCAGTTTATGGGAGTTTGATTGTGATGCTGGTATTTTTACCTGTCAAACTTGCTATGCGGATGGCACCCACCATATTTCCTCTTGATATTGCGGTTTCTGACCCATTTACTGAAATTCCAGCTGATATGCTTCTCTTTCAGATATGCATTCCATTTGCTGTAGAGCATTTTAAATTGCGGACAACAATTAAATCTCTTCTACGCTTTTGGTTTACTGTGGTTGGCTGGGCACTGGGTTTAACAGATTTCTTATTACCCAGACCTGATGACAATGTTGGTCAGGAAAATGGAAATGGGGAACCTGTAAGAAACGATGGTTTGCAGGTTGTTCAAGTTGGTAGGCAGGATCAGGGACTCTTCGCTGGTGTTGGTGCTAATGATCCAACTCGTGGCATTCATAATGAAGGAGATGCAAGTAATGAAGAAGGTTATGATGCTGATCAACAATCTGATTCAGATAGGTATAGGTTTGTACTTCGCATCGTCCTCCTGTTAATTATAGCATGGATGACCCTTCTTATATTCAACTCAGCCTTGATAGTGGTACCGGTATCATTTGGACGAGCACTTTTCAATGCTATTCCGCTTCTTCCAATAACTCATGGCATCAAGTGCAATGATCTATATGCTTTCATCATTGGAAGCTATGTAATTTGGACTATTATGGCTGGAGCCAGATATTGCGTTGAGTATATTAAATCAAAGAGAGTCACTGTGTTGTTGGGTCAGATATGGAAGTGGTGTGGCATTCTTATCAAAAGTTCTGCTCTTTTATCTATATGGATTTTCATCATTCCAGTGCTCATTGGATTACTCTTTGAGCTTTTGGTGATTGTCCCGATGCGCGTTCCAGTTGATGAGAGCCCAGTTTTTCTTCTCTATCAGGACTGGGCATTAGGTCTCATATTCCTCAAGATTTGGACGAGACTGGTTATGCTGGATCATATGATGCCTCTGGTGGACGAAAGTTGGCGAGTAAAATTCGAAAGAGTGCGAGAAGATGGTTTCTCGAGGCTGCAAGGTCTCTGGGTATTACGAGAGATAGTCGTCCCAATCATAATGAAGCTGCTGACTGCTCTATGCGTTCCATACGTTATGGCTAGAGGAGTATTTCCTTTGCTCGGATATCCATTAATAGTGAACTCGGCAGTTTACAGGTTTGCCTGGATTGGCTGCCTCTGCTTTAGCGTGCTCTTCTTCTGTGCAAAGAGATTCCACATTTGGTTTACCAACCTTCACAACTCAATACGAGACGACCGCTATTTGATTGGTCGGAGGCTACATAATTACGGAGAGTACAACGCCAAGAAGGAAAATAGCGAAACCGGATCGTCCTCGGAGACTAAAACCAGTCCTCTGAATCTCCCGGGTCGCGAAGCGGAAGTGGGGTTGCGACTGAGGCATGTACACTAA 2790 43.58 MEIAPASRPSLEGDGVNDSVSVDSASVRDASSPSSSYSATSMSPDESRESEGKASMLSSEAARYEDDEEEEDVCRICRNPGDAENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFSPVYAANAPTRLPFQEFIVGMTMKACHVVQFFLRLSFVLASNMIFLGVVIFVPFSLGRIILYYVSWLFSPVSDLVLSTAMPITESALALANITLKNALTAVENLSSDSQENGLLGQAAEMLKLNSSAVNDASYNMTTAISADLLKGTIIGTSRFSDLTTLAIGYLFIFSFVVIYLGVVTLIRYTKGEPLSVGRLYGIASIAEIVPSLIRQFLVAMRHLMTMIKVSFLLVIELGVFPLMCGWWLDVCTIRMFGKTMVQRVQFFSASPLSSSLVHWVVGIVYMLQISIFVSLLRGVLRSGVLYFLRDPADPNYNPFRDLIDDPVHKHARRVLLSVAVYGSLIVMLVFLPVKLAMRMAPTIFPLDIAVSDPFTEIPADMLLFQICIPFAVEHFKLRTTIKSLLRFWFTVVGWALGLTDFLLPRPDDNVGQENGNGEPVRNDGLQVVQVGRQDQGLFAGVGANDPTRGIHNEGDASNEEGYDADQQSDSDRYRFVLRIVLLLIIAWMTLLIFNSALIVVPVSFGRALFNAIPLLPITHGIKCNDLYAFIIGSYVIWTIMAGARYCVEYIKSKRVTVLLGQIWKWCGILIKSSALLSIWIFIIPVLIGLLFELLVIVPMRVPVDESPVFLLYQDWALGLIFLKIWTRLVMLDHMMPLVDESWRVKFERVREDGFSRLQGLWVLREIVVPIIMKLLTALCVPYVMARGVFPLLGYPLIVNSAVYRFAWIGCLCFSVLFFCAKRFHIWFTNLHNSIRDDRYLIGRRLHNYGEYNAKKENSETGSSSETKTSPLNLPGREAEVGLRLRHVH 929
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10885920 10893071 - Bma007432.1 Bma12g00433 91859

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00433 929 ProSiteProfiles Zinc finger RING-type profile. 74 121 IPR001841 -
Bma12g00433 929 SUPERFAMILY RING/U-box 68 124 - -
Bma12g00433 929 MobiDBLite consensus disorder prediction 587 607 - -
Bma12g00433 929 PANTHER SSM4 PROTEIN 164 879 - -
Bma12g00433 929 PANTHER SSM4 PROTEIN 62 166 - -
Bma12g00433 929 MobiDBLite consensus disorder prediction 895 914 - -
Bma12g00433 929 CDD RING_CH-C4HC3_MARCH6 73 122 - -
Bma12g00433 929 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 132 IPR013083 -
Bma12g00433 929 Pfam RING-variant domain 74 120 IPR011016 GO:0008270
Bma12g00433 929 ProSiteProfiles Zinc finger RING-CH-type profile. 66 127 IPR011016 GO:0008270
Bma12g00433 929 MobiDBLite consensus disorder prediction 895 912 - -
Bma12g00433 929 PANTHER ZINC FINGER, RING-CH-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 62 166 - -
Bma12g00433 929 SMART ringv_2 73 121 IPR011016 GO:0008270
Bma12g00433 929 MobiDBLite consensus disorder prediction 1 66 - -
Bma12g00433 929 MobiDBLite consensus disorder prediction 17 45 - -
Bma12g00433 929 PANTHER ZINC FINGER, RING-CH-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 164 879 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00433 K10661 MARCH6, DOA10; E3 ubiquitin-protein ligase MARCH6 [EC:2.3.2.27] - jre:108988864 1258.05
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g00433 Bma-Chr12:10885920 Bma15g00158 Bma-Chr15:1664058 8.86E-10 dispersed
Bma12g00433 Bma-Chr12:10885920 Bma14g01619 Bma-Chr14:33929093 2.36E-10 transposed
Bma12g00433 Bma-Chr12:10885920 Bma14g01644 Bma-Chr14:34761088 2.36E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g385 . Blo15g00755 Bda06g01078 . Bpe07g00369 . . Bma12g00433 Cmo19g00615 Cmo11g01375 . . . . . Cpe04g00289 Cpe15g00481 Bhi05g01074 . . . . . . Cla02g00612 Cam02g0641 Cec02g0640 Cco02g0661 Clacu02g0645 Cmu02g0640 Cre02g0964 . . Cone3ag0981 Cone10ag1001 . Csa07g00748 . Cme01g00060 . . . . . . . . . . . Cma11g01740 Cma19g00597 . . . . . . . . . . . . . . . . . . . . Chy01g00063 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005956 2 1 1 1 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 2 1 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00433 Bma_Chr12 FPKM 17.639786 15.526908 14.311439 28.801929 12.235842 13.125997 11.389991 17.7717 19.127989 18.841497