Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00439 ATGCAAGGGAAAAGTAGTGCGAATAATTCACTCCCTGAAATTATTGGTATCGGGCAAGGATCTGCAACCAGTACTGCTGTTATGAATCAGCAAAATGTGCCGGCAAATAATAGTAATGTTACTCCCGTGGAAAACCGATTGTCAAATTATATGATATCATCTGGTGAAACATGCACACATTCTCCTAGTCATGATGGCCAGAGCTTTGATAGTTGGAATTCTGGTGAACCTAGCTCGAGGCATAATATGCAGAACGATACAGATGATGAACGGCTGAAAATGGAGCATGTTTGGTCTCCCTTAAATACCTGTTCTGGGAATGGTTTGAGAATAGAAGAGAGTCAATTTGGGGCTTCCAATTCCCTTTTTCGTGGGAGAACTGATGTTGGGTCGAGCAGTTATCAGATGAGAGACAGGCCATTTTTTTCACAAGGTTCAACCTCCAATATCACTTATCATAATGAAAGGCTAGATACTGAGTATGTTGGAAATAATAGTCGCAGGCTCGGAGTTGGATCTGGTTGTTCTAATCCATATAAGTCAACTCAATCAGAAACTGAGCAGACTTCTTCTGCTTCCTTTTGTCATAATCCATCCGGAGTCTCTGATAATATGATGGTGGACAGTGATTGTGAGCCCAGTTCTTCAGGTACATGGGGATTATCCTGCAAGAGAAAATCCCTTGAAGGAACTTCCAGGCAGCTTTATCCTGGTGGAAGTTCTAGCTCCTTCCCACAGCCAGAACATGGTTCATTATGCAGTTTAAGTTTATCTACTCCTGCCCATGCATCTCCTTGCACCGGTCTTCCTGAGCATCGGAGCTCAAGTATCAGTACTGTTGGAATGAGAACAGTTTCCGATGTGTTCCCTTCTTCAAGTGTGACAAATAATTTTGAGAGACCTTTAAGAGACTTGGGTAGGATAGCTACTTTGAGGACATCTCAGGACTATGTGCCAGTTAGTATATTATCTGTTGGGAGTGCTAGGCATCCAAACCCTACCCAATTTAGAGATTTAGCGGAGAGACCAACAGCAAGTTTAGCTGGTAATTCAGGAGCGCCACCCCTAGGACTTTCCCATGGTAATGAAGTTCCTGGCATTACAAGAAGCACTCGTTTTTTCTCCTGGGATGGGAATTCTACTTCAAGAGGTGAAAGTTTTTCAAGTTCACTTTTACCTGGACACAGAACTCTAGCGCGAGAAGACTTGAGTATAGGTAGGCCTTCGCGAAACAGTGCAGAACATCACATTCTTTTACCTGCAACTGAGACAAGAAACTCAACTCATGATCCAACTAGCTGGAGTTTAGCAAGTGGAAACGTAAACAATCCTTTCAGTCCTTCCACTTCTCGAATCAGCCCTAGTTCTAGCGTACATTCTTTACCGAATCCTGCATTGATTCCGCCCAACCTTCCTAGAGAAAATCAGCGAAGGGTGCTAGAATTTGCACCTTGGTCTTTGTTTCCATCTACTGATGCTGAGTCTGAAGTTCATAGTGCTCACTTTTCTTCATTACCGTCAGCTCCTAATTCGTCAAGGGATGCAACCATATCATCCGGACCTAGTAGCCTTCGGCATCATCAATCACATCCTAGGTCGGCTTTCTTTCTGGAGAGATTGAATGATGACATTTCAGGGACTCCTCATTCATTACGTGCTTTGGCTGCTGACATTGAGGGCAGGCGCCAACTAATAACTGAGGTTTGGTTTCAACTTTTTTATTTCTCCTTTCTGAGTTTCTATGATTATATGCTCTTTGACCCATTCGTATACCATGGTATGGCTGAGATTCATGATAGGCATAGGGACATGCGCCTTGATGTTGACAACATGTCTTATGAGGAACTGTTGGCCTTAGAAGATCGCATTGGAGATGTTAGCACCGGAGTTAGTGAAGATATGATTTTAAAGCTAATGAAACAACAGAAATATGAGTTGATCAAAACTCCAACTCCCCCAGATTTGGAACCGTGCTGCATCTGTAAGCTACCCTTAATTTGTTTGAATCTTCTAATGGATTTAGCTGCCAAATTACAGGAGGATTATGCTGATGCAGATATTATTGGGACATTAGATTGTGGGCACAATTTCCATACCAACTGCATTAAGCAGTGGTTGATGCTGAAGAATCTGTGTCCCATTTGTAAAACAACGGCCTTGGTATCATGA 2169 42.74 MQGKSSANNSLPEIIGIGQGSATSTAVMNQQNVPANNSNVTPVENRLSNYMISSGETCTHSPSHDGQSFDSWNSGEPSSRHNMQNDTDDERLKMEHVWSPLNTCSGNGLRIEESQFGASNSLFRGRTDVGSSSYQMRDRPFFSQGSTSNITYHNERLDTEYVGNNSRRLGVGSGCSNPYKSTQSETEQTSSASFCHNPSGVSDNMMVDSDCEPSSSGTWGLSCKRKSLEGTSRQLYPGGSSSSFPQPEHGSLCSLSLSTPAHASPCTGLPEHRSSSISTVGMRTVSDVFPSSSVTNNFERPLRDLGRIATLRTSQDYVPVSILSVGSARHPNPTQFRDLAERPTASLAGNSGAPPLGLSHGNEVPGITRSTRFFSWDGNSTSRGESFSSSLLPGHRTLAREDLSIGRPSRNSAEHHILLPATETRNSTHDPTSWSLASGNVNNPFSPSTSRISPSSSVHSLPNPALIPPNLPRENQRRVLEFAPWSLFPSTDAESEVHSAHFSSLPSAPNSSRDATISSGPSSLRHHQSHPRSAFFLERLNDDISGTPHSLRALAADIEGRRQLITEVWFQLFYFSFLSFYDYMLFDPFVYHGMAEIHDRHRDMRLDVDNMSYEELLALEDRIGDVSTGVSEDMILKLMKQQKYELIKTPTPPDLEPCCICKLPLICLNLLMDLAAKLQEDYADADIIGTLDCGHNFHTNCIKQWLMLKNLCPICKTTALVS 722
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11073626 11080894 + Bma007443.1 Bma12g00439 91865

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00439 722 SUPERFAMILY RING/U-box 657 719 - -
Bma12g00439 722 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 623 720 IPR013083 -
Bma12g00439 722 MobiDBLite consensus disorder prediction 173 197 - -
Bma12g00439 722 MobiDBLite consensus disorder prediction 499 528 - -
Bma12g00439 722 SMART ring_2 658 715 IPR001841 -
Bma12g00439 722 ProSiteProfiles Zinc finger RING-type profile. 658 716 IPR001841 -
Bma12g00439 722 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 7 721 - -
Bma12g00439 722 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 7 721 IPR045191 GO:0061630
Bma12g00439 722 MobiDBLite consensus disorder prediction 419 472 - -
Bma12g00439 722 Pfam RING-H2 zinc finger domain 665 716 IPR024766 GO:0008270
Bma12g00439 722 MobiDBLite consensus disorder prediction 421 463 - -
Bma12g00439 722 MobiDBLite consensus disorder prediction 53 86 - -
Bma12g00439 722 MobiDBLite consensus disorder prediction 53 81 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00439 - - - qsu:112033740 594.349
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00659 Bma-Chr1:6000514 Bma12g00439 Bma-Chr12:11073626 4.58E-64 dispersed
Bma01g01919 Bma-Chr1:70826452 Bma12g00439 Bma-Chr12:11073626 6.70E-32 dispersed
Bma01g02122 Bma-Chr1:77636854 Bma12g00439 Bma-Chr12:11073626 5.81E-30 dispersed
Bma02g00056 Bma-Chr2:478451 Bma12g00439 Bma-Chr12:11073626 1.64E-26 dispersed
Bma12g00439 Bma-Chr12:11073626 Bma01g02125 Bma-Chr1:77736610 6.51E-28 dispersed
Bma12g00439 Bma-Chr12:11073626 Bma01g01312 Bma-Chr1:17911667 1.26E-30 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g391 Blo02g00829 Blo15g00751 . . . . . Bma12g00439 . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag1184 Cone10ag0997 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015397 4 0 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 11
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00439 Bma_Chr12 FPKM 179.390915 186.689423 245.609451 241.170044 104.851463 125.287514 96.862846 109.647285 113.500107 111.114922