Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00441 ATGGGAGTGAAGTCGGCGACTGGGTCTGTTATTCTGGCACCTACTAATCAGCAGGACTCCATAACCAGTCAGCTTAATAATGGTGTCCGAGGGTTGATGCTGGATATGTATGACTTCGAGAATGACATCTGGTTATGCCACTCCTCTGGTGGTCAATGCTATAATTTTACAGCATTTCAACCGGCCATTAATGTTCTGAGGGAGATCCAAGTATTTCTTGAGGCAAATCCATCCGAGATCATCACCATTATCATTGAAGACTATGTTACATCACCAAACGGCTTGACCAAGGTGTTCAACGCTGCTGGGCTGAGAAAATTCTGGTTTCCAGTATCTAGAATGCCGAAGAACGGAGGAAACTGGCCAACTGTTGCAGATATGATTCAGAAAAATCAACGTTTGTTAGTTTTTACTTCAAAAGCATCTAAGGAGGCTTCCGAAGGAATTGCTTACGAGTGGCGATATGTTGTCGAAAACCAATATGGCAACGATGGGATGAAAGCTGGTTTTTGCCCAAATCGAGCGGAATCGCCTCCTTTGAACACAACATCGAGATCATTAGTCTTAGTAAACTATTTCCCAAGTCTTGCAAACTTAGCAGGGGCATGCAAGGATAACTCTGCCCCTTTACTTGACATGATTAATACATGTCATGCTGCAGCAGGTAAAAGGTTGCCTAACTTCATCGCAGTCGATTTTTACAAGAGGAGTGACGGCGGCGGAGCGGCAGAAGCTGTCGATAGAACAAATGGTCAGTTAGTTTGCGGGTGTCAAAGCATCTCCTATTGCAAGGAAAACATGAGTTTTGGAAAGTGTGATGAGCCAGAGGCAGCCAACGCGTCATCACCTCAGGCAGCAACACCTGAATCCGGCTTTGCTTATTCACACAGCAGATCACTTCATACTTTCAACTTGGTTTCAATAATTGCTGCAGCTTTTCTCTCATCGACATGA 954 44.55 MGVKSATGSVILAPTNQQDSITSQLNNGVRGLMLDMYDFENDIWLCHSSGGQCYNFTAFQPAINVLREIQVFLEANPSEIITIIIEDYVTSPNGLTKVFNAAGLRKFWFPVSRMPKNGGNWPTVADMIQKNQRLLVFTSKASKEASEGIAYEWRYVVENQYGNDGMKAGFCPNRAESPPLNTTSRSLVLVNYFPSLANLAGACKDNSAPLLDMINTCHAAAGKRLPNFIAVDFYKRSDGGGAAEAVDRTNGQLVCGCQSISYCKENMSFGKCDEPEAANASSPQAATPESGFAYSHSRSLHTFNLVSIIAAAFLSST 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11109356 11112584 - Bma007445.1 Bma12g00441 91867

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00441 317 PANTHER UNCHARACTERIZED 2 287 - -
Bma12g00441 317 Gene3D Phosphatidylinositol (PI) phosphodiesterase 5 254 IPR017946 GO:0006629|GO:0008081
Bma12g00441 317 CDD PI-PLCc_At5g67130_like 5 250 - -
Bma12g00441 317 SUPERFAMILY PLC-like phosphodiesterases 15 254 IPR017946 GO:0006629|GO:0008081
Bma12g00441 317 PANTHER PLC-LIKE PHOSPHODIESTERASES SUPERFAMILY PROTEIN 2 287 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00441 - - - rcu:8275284 495.738
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma11g00818 Bma-Chr11:25491040 Bma12g00441 Bma-Chr12:11109356 4.25E-154 dispersed
Bma12g00441 Bma-Chr12:11109356 Bma15g00127 Bma-Chr15:1397067 2.62E-107 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g394 . Blo15g00750 Bda06g01073 . Bpe07g00375 . . Bma12g00441 . . Cma02g00450 . Car02g00306 . . . . . . . . . . . . . . . . . . Cone12ag1084 . Cone3ag1181 Cone10ag0992 Lsi10g00528 . . . . . . . . . . . . Cmo02g00459 . . . . . Cpe14g00291 Cpe01g00437 . . . . . . . . . . . . . . . . . Cme11g00541
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002524 2 2 2 1 2 1 3 1 1 1 1 2 2 2 2 4 2 5 3 2 2 2 2 2 1 1 1 3 1 3 59
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00441 Bma_Chr12 FPKM 1.117082 1.241519 0.0 0.0 6.117891 6.363682 5.694582 5.618489 4.972214 4.467223