Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00444 CAAAATGCAACAGTGTTTTGTGGGTTTGGAACAAAGATTTCAGTCAATTACGAGTGCTTGGGTCGAACGACTGTGACAGAGATGTTGGAATCTGCAGATTTTCTGGATGTTGTTCAAAATTGCCAAATGCCATTATCCGAAGACAGTAAGTGCAAGAAGTGTATAAATGCGGGAATTGTATACCTTCATCATATTGTGGGAATTAATGATAATATAACGTTGAGTACATGCCGTGATGCTACTTTTGTCACACTTGCTAGTCAGGTAGATCCTAATTCGGCAGGTGATATTGCCAACTGTTTCTTTGGAGTTCAAGGGATTAACATGCATACAGAGCCATCCCCAAATTTGTTGGCTCCAGGAGTTTCTCCCAGTTCTATGGATGCTGTAAGCCCAAGCCAACAACTGTTAGGCATACCCATCTCCAAAAAGCACCATTCCTATCAACTGACACTAGTTCCAGGCATTGGCATTGCTGTTACAGCATTTTCTGTTCTGCTGCTAGTGGTCTTGATAGTGCTGATTTGTCGTAAAAACAGACAACTGGATGATTCTGAGAATTTGGACTTCACATCTTCCAAAACCTTTTCTGTCCCTCGGACAGTCAAAAAAATTCAAGATGGTAATTTTATGTTTCAAAAAATCAGCTACAAGGATATAAAGAAGGGTACGGATAATTTCAACAATGAAATTGGATGTGGAGGTTTTGGAACAATTTACAAGGCCCAGTTTAGTGATGGTTTAGTGGCAGCAGTGAAGAGGACTAACAGAGTATCAGGACAGGCGGAAGATGACTTCTGTCAAGAGATAGAGCTTCTTGCTAGATTGCATCATCGACACCTCGTTGCTCTAAGAGGCTTTTCTATCGGAAAACATGAAAGGTTTCTCGTATATGAGTACATGGCGAATGGAAGCTTAGCTGATCATCTTCACTTACCCAATAAAACTCCGTTAAGTTGGCGGACAAGGATGCAAATTGCCATAGACGTGGCCAATGCTCTGGAGTACCTCCATTTTTATTGTAATCCTCCGCTGTGCCATAGAGACATCAAATCCAGCAACATATTACTGGATGAATATTTAGTTGCCAAGGTAGTTGCAGATTTTGGCCTTGCTCACGCTTTAAAAGATGGTTCTGTATGCTTGGAGCCGGTAAATACTGATGTTCAGGGAACACCAGGTTACATTGATCCTGAGTATGTCGTCACTCAAGAACTTACCGAGAAAAGTGATGTATACAGCTATGGCGTGCTACTCTTGGAAATAGTTACTGGAAGATTAGCGATACAAGACAGCAAGAATTTGGTAGAATGGTCACAATCTTACATGCAATCGGAGTCGACAATACAAGATTTAGTCGATCCGAGAATTAAGGATGCCTTCGACTTGGAACAGCTTCATGGAGTTGTTTCAATAGTAAGATGGTGTACACAGAGAGAAGGAAGGGATAGGCCGTCGATTAAGCAGGTTCTTCGGCTTCTATACGAAAGTTCAGACCCAATGCATAGCGGTTTTATAGAAGCAATTGGGGATGAAGACTGTGAGGGGACTGAAGGAAGAGGAAGAACAAATAAAGGTAAAACGCACGGAAATGATGGGATTTTTCACAGTGGAGATGGAAGATTCCTAGCTTCTTCTTCGAGTACATCGAGATCTCATTGTAGCAGAAGCTTTTTGCTTGAAACCAGCTCTCCTCAGTCGCCTTGTTGA 1710 41.81 QNATVFCGFGTKISVNYECLGRTTVTEMLESADFLDVVQNCQMPLSEDSKCKKCINAGIVYLHHIVGINDNITLSTCRDATFVTLASQVDPNSAGDIANCFFGVQGINMHTEPSPNLLAPGVSPSSMDAVSPSQQLLGIPISKKHHSYQLTLVPGIGIAVTAFSVLLLVVLIVLICRKNRQLDDSENLDFTSSKTFSVPRTVKKIQDGNFMFQKISYKDIKKGTDNFNNEIGCGGFGTIYKAQFSDGLVAAVKRTNRVSGQAEDDFCQEIELLARLHHRHLVALRGFSIGKHERFLVYEYMANGSLADHLHLPNKTPLSWRTRMQIAIDVANALEYLHFYCNPPLCHRDIKSSNILLDEYLVAKVVADFGLAHALKDGSVCLEPVNTDVQGTPGYIDPEYVVTQELTEKSDVYSYGVLLLEIVTGRLAIQDSKNLVEWSQSYMQSESTIQDLVDPRIKDAFDLEQLHGVVSIVRWCTQREGRDRPSIKQVLRLLYESSDPMHSGFIEAIGDEDCEGTEGRGRTNKGKTHGNDGIFHSGDGRFLASSSSTSRSHCSRSFLLETSSPQSPC 569
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11231440 11234928 + Bma007449.1 Bma12g00444 91870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00444 569 MobiDBLite consensus disorder prediction 512 534 - -
Bma12g00444 569 Gene3D Transferase(Phosphotransferase) domain 1 301 505 - -
Bma12g00444 569 MobiDBLite consensus disorder prediction 512 569 - -
Bma12g00444 569 SUPERFAMILY Protein kinase-like (PK-like) 210 495 IPR011009 -
Bma12g00444 569 CDD STKc_IRAK 231 494 - -
Bma12g00444 569 SMART serkin_6 225 501 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma12g00444 569 ProSiteProfiles Protein kinase domain profile. 225 505 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma12g00444 569 MobiDBLite consensus disorder prediction 541 569 - -
Bma12g00444 569 PANTHER BNAC06G02630D PROTEIN 1 568 - -
Bma12g00444 569 ProSitePatterns Serine/Threonine protein kinases active-site signature. 345 357 IPR008271 GO:0004672|GO:0006468
Bma12g00444 569 Gene3D Phosphorylase Kinase; domain 1 191 300 - -
Bma12g00444 569 Pfam Protein kinase domain 228 492 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma12g00444 569 PANTHER OS01G0750732 PROTEIN 1 568 - -
Bma12g00444 569 ProSitePatterns Protein kinases ATP-binding region signature. 231 253 IPR017441 GO:0005524
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma05g00474 Bma12g00444 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g00444 Bma-Chr12:11231440 Bma04g01239 Bma-Chr4:36567348 6.13E-67 dispersed
Bma05g00513 Bma-Chr5:25441025 Bma12g00444 Bma-Chr12:11231440 0 transposed
Bma14g00376 Bma-Chr14:4526917 Bma12g00444 Bma-Chr12:11231440 1.70E-52 transposed
Bma12g00444 Bma-Chr12:11231440 Bma05g00474 Bma-Chr5:17633591 3.21E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66813 PF00069 Pkinase 5.70E-46 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00444 - - jcu:105639495 833.172