Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00445 ATGGGAATTGCTGCCAATCGTAGGGGCTCGAGAACTATGACGAACCAGGACAGCTTGCTCGTACAAAATGGCGTTCAGACGACGGCGCAGAAAAAATGGACCAATCTGATGCCTTTGGTTGTAGCCCTTGTTGTTATTGCAGAAATTGCCTTTCTGGGTCGCCTCGACATTGTAAAAAATGCTGCGTTGGTCGATTCCTTGGCCGACCTATTCTATCAGTCGCCACCTTCGCGGGAGATGTTGCAGGGTGTTGGTGATTTCAATTCTGGATCTACTCTCGGCGATGAGAATGTTGAATTGGAAAGCTGCGAGGAGTGGTTAGAGAAAGAAGACGCTGTTGTGTATTCTAGAGACTTCGGGAAAGAACCCATCTTAGTTTCTGGTGCTGAGAAGGAGTGGAAATCTTGTGCTGTGGGGTGTAAATTTGGATTTAATCCTGATAAGAATCTTGATGCTGCATTTGGTTTTGAAGGGGGAACATATAGTGTAATCCTATCTATGGAATCGGCCAAGTACTATCCAGTGAATGATATTGCATTTGCACGACGGAAAGGTTATAGTGTTATAATGACCACTAGTCTCTCGTCAGATGTTCCTGTTGGATATTTTTCATGGGCTGAGTATGATATCATGGCACCAGTGTGGCCAAAGACTGAGAAGTCCCTTGCAGTTGCTTTTATTTCAAATTGTGGTGCTCTTAACTTTCGGTTGCAAGCTCTTGAGGCTCTTGAAAAGCTGAAAGTCAAGATCGATTCTTATGGACGTTGCCACAGAACTCATGATGGACAAGGTGTGAATTTCTTTCATCGTGTGTGTGCAGTGGATAAGGTGGAGACTCTTAGGCGATATAAATTTAGCCTGGCATTTGAAAACTCCAACGAGGAGGATTATGTCACTGAGAAATTTTTCCAATCTCTTGTAGCAGGAACGATTCCGGTTGTGGTTGGAGCGCCTAATATAGAAGATTTTGCTCCTTCTCCTGGTTCGATTTTACATATTAAGGAACTGTCAGATGTCGAGGCAGTTGCGAAATCCATGAAGTATCTTTCGGAAAATCCAGATGCGTATAACCAGTCGATGAGGTGGAAATATGAAGGTCCATCTGATTCTTTCAAGGCTCTAGTGGACATGGCAGCTGTTCACTCATCATGCCGCCTTTGCATTCACCTGGCGACTTTAATTCGTGACAAAGAAGAAAAGAGCCCCGCCTTTAAGAAACGCCCTTGCAAGTGTCACAGAGGCTCGGAAACGGTTTACCATTTATTTGTCAGAGAAAGGGGGAGGTTTGATTTGGAGTCCATTTTCTTGAGGTCCGGAAATTTGAGTTTAGAGGCTCTACGGTCAGCAGTGGTCGAGAAGTTCAGTTCTCGAAAGCATACTCCGGTATGGAAGGAGGAAAGGCCAGAAAGCATAAGGGGTGGGGATGAGCTGAAAGTGCATAGAATATATCCTGTGGGTTTGACTCAAAGACAGGCTTTGTATACCTTTAGATTTGAACTGGATTCTGATCTCAGAAACCATGTGGAAAGCAATCCTTGTCCAAAGCTTGAAGTCATCTTTGTTTAG 1566 44.32 MGIAANRRGSRTMTNQDSLLVQNGVQTTAQKKWTNLMPLVVALVVIAEIAFLGRLDIVKNAALVDSLADLFYQSPPSREMLQGVGDFNSGSTLGDENVELESCEEWLEKEDAVVYSRDFGKEPILVSGAEKEWKSCAVGCKFGFNPDKNLDAAFGFEGGTYSVILSMESAKYYPVNDIAFARRKGYSVIMTTSLSSDVPVGYFSWAEYDIMAPVWPKTEKSLAVAFISNCGALNFRLQALEALEKLKVKIDSYGRCHRTHDGQGVNFFHRVCAVDKVETLRRYKFSLAFENSNEEDYVTEKFFQSLVAGTIPVVVGAPNIEDFAPSPGSILHIKELSDVEAVAKSMKYLSENPDAYNQSMRWKYEGPSDSFKALVDMAAVHSSCRLCIHLATLIRDKEEKSPAFKKRPCKCHRGSETVYHLFVRERGRFDLESIFLRSGNLSLEALRSAVVEKFSSRKHTPVWKEERPESIRGGDELKVHRIYPVGLTQRQALYTFRFELDSDLRNHVESNPCPKLEVIFV 521
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11235371 11240873 - Bma007450.1 Bma12g00445 91871

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00445 521 PANTHER ALPHA- 1,3 -FUCOSYLTRANSFERASE 30 499 IPR001503 GO:0006486|GO:0008417|GO:0016020
Bma12g00445 521 PANTHER BNAA06G03030D PROTEIN 30 499 - -
Bma12g00445 521 Pfam Glycosyltransferase family 10 (fucosyltransferase) C-term 219 392 IPR001503 GO:0006486|GO:0008417|GO:0016020
Bma12g00445 521 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 108 396 - -
Bma12g00445 521 Gene3D - 182 370 IPR038577 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00445 K00753 E2.4.1.214; glycoprotein 3-alpha-L-fucosyltransferase [EC:2.4.1.214] - zju:107427081 759.214
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g00445 Bma-Chr12:11235371 Bma12g00448 Bma-Chr12:11296475 0 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma14g01656 . 49 536 Xyloglucan Fucosyltransferase1 AT1G14080 54.9 2.7e-156 548.9
Bma14g01656 . 69 537 Xyloglucan Fucosyltransferase1 AT1G14100 56.7 4.7e-158 554.7
Bma14g01656 . 67 540 Xyloglucan Fucosyltransferase1 AT1G14110 53.3 4.1e-140 495.0
Bma12g00448 . 1 511 Xyloglucan Fucosyltransferase1 AT1G49710 62.8 4.4e-188 654.4
Bma12g00445 . 1 521 Xyloglucan Fucosyltransferase1 AT1G49710 62.2 8.2e-187 650.2
Bma05g00514 . 1 477 Xyloglucan Fucosyltransferase1 AT1G49710 58.9 6.6e-168 587.4
Bma02g00194 . 1 403 Xyloglucan Fucosyltransferase1 AT1G71990 69.1 4.7e-161 564.3
Bma14g01656 . 1 536 Xyloglucan Fucosyltransferase1 AT2G03210 56.9 6.4e-180 627.5
Bma14g01656 . 1 534 Xyloglucan Fucosyltransferase1 AT2G03220 62.5 6.6e-198 687.2
Bma14g00185 . 2 329 Xyloglucan Fucosyltransferase1 AT2G03220 52.4 3.2e-99 359.4
Bma14g01656 . 69 536 Xyloglucan Fucosyltransferase1 AT2G15350 52.2 5.4e-146 514.6
Bma14g01656 . 69 536 Xyloglucan Fucosyltransferase1 AT2G15370 52.5 7.6e-143 504.2
Bma14g01656 . 69 536 Xyloglucan Fucosyltransferase1 AT2G15390 53.9 1.3e-150 530.0
Bma12g00445 . 1 521 Xyloglucan Fucosyltransferase1 AT3G19280 62.8 1.2e-187 652.9
Bma12g00448 . 1 511 Xyloglucan Fucosyltransferase1 AT3G19280 63.1 2.8e-187 651.7
Bma05g00514 . 1 477 Xyloglucan Fucosyltransferase1 AT3G19280 58.7 9.3e-167 583.6
Bma14g01656 . 1 536 Xyloglucan Fucosyltransferase1 AT2G03210 56.9 6.4e-180 627.5
Bma14g01656 . 1 534 Xyloglucan Fucosyltransferase1 AT2G03220 62.5 6.6e-198 687.2
Bma14g00185 . 2 329 Xyloglucan Fucosyltransferase1 AT2G03220 52.4 3.2e-99 359.4
Bma14g01656 . 1 536 Xyloglucan Fucosyltransferase1 AT2G03210 56.9 6.4e-180 627.5
Bma14g01656 . 69 536 Xyloglucan Fucosyltransferase1 AT2G15390 53.9 1.3e-150 530.0
Bma14g01656 . 69 536 Xyloglucan Fucosyltransferase1 AT2G15370 52.5 7.6e-143 504.2
Bma14g01656 . 49 536 Xyloglucan Fucosyltransferase1 AT1G14080 54.9 2.7e-156 548.9
Bma14g01656 . 69 537 Xyloglucan Fucosyltransferase1 AT1G14100 56.7 4.7e-158 554.7
Bma14g01656 . 67 540 Xyloglucan Fucosyltransferase1 AT1G14110 53.3 4.1e-140 495.0
Bma14g01656 . 69 536 Xyloglucan Fucosyltransferase1 AT2G15350 52.2 5.4e-146 514.6
Bma12g00445 . 1 521 Xyloglucan Fucosyltransferase1 AT3G19280 62.8 1.2e-187 652.9
Bma12g00448 . 1 511 Xyloglucan Fucosyltransferase1 AT3G19280 63.1 2.8e-187 651.7
Bma05g00514 . 1 477 Xyloglucan Fucosyltransferase1 AT3G19280 58.7 9.3e-167 583.6
Bma12g00448 . 1 511 Xyloglucan Fucosyltransferase1 AT1G49710 62.8 4.4e-188 654.4
Bma12g00445 . 1 521 Xyloglucan Fucosyltransferase1 AT1G49710 62.2 8.2e-187 650.2
Bma05g00514 . 1 477 Xyloglucan Fucosyltransferase1 AT1G49710 58.9 6.6e-168 587.4
Bma02g00194 . 1 403 Xyloglucan Fucosyltransferase1 AT1G71990 69.1 4.7e-161 564.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001699 7 4 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 2 4 1 70
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00445 Bma_Chr12 FPKM 37.92453 37.815781 48.56398 49.939518 26.115568 25.014711 29.807478 15.239467 15.929846 17.863138