Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00451 ATGGCAGATTCGAAGGCCAATGCATGCTATGCGCCTTCATATCAACTAATCAGAAGCACTTCAGATGGTCCTGTTGCAATTTTCTGGGACATTGAAAACTGTCCTGTCCCTAGTGATGTCCGTCCTGAAGATGTTGCTGGGAGTATTAGGATGGCATTAAGAGTACACCCTGTGATTAAAGGGGCAGTAATGATGTTCTCTGCATATGGGGACTTTAATGCCTTCCCAAGGCGACTCAGAGAAGGTTGCCAAAGAACCGGGGTGAAACTTGTTGATGTTCCAAATGGTAGGAAAGATGCTGCTGATAAGGCTATTCTGGTCGATATGTTTCTTTTTGCCCTTGATAACCCTCCGCCTTCTTCCATTATGCTTATTTCGGGGGATGTTGATTTTGCTCCAGCACTTCACATACTTGGTCAACGAGGATATACTGTGATTCTTGTCATTCCTTCTGGGGTAGGCGTTTCATCTGCCCTTAGCAATGCCGGCAAGTTTGTGTGGGATTGGCCAAGTGTGGCTCGTGGGGAAGGATTTTCACCCGCCATGAAGGCTGTGATGTCTTCTAGAGGAACAGGTATTGCTGATGTTTCTGGGTATTTTGCTGGAGTTAATATGAACGACAACTTAGACGGCCAAATGGAAGAAGAAGCTATTGTGTATAGAGGAATCTCACAAAGATATTATAATTCAAGAGATTTCTCAATAGTAACTCAATCTGTCTCTGAGTATAATAGTTCTTTGATAATGCCTTGTTTGCCTGCAACCTCAAGATCGCATAGTCTACCATCTGGTTTAAACGAGGTATCGAGTTGTCCTATATCATCAATTGATCAGAACGAATTGACTTGGGTACAACCTGGGGATCTAAATGGTCTGAAGCACCAGCTGACAAGGCTGCTAGAACTTTCGGGGGGATGTTTGCCTCTATCTCGGGTGCCTGCAGAGTACCTAAAGGTTTTCGGAAGGCCCCTTTACGTTGCTGAGTATGGTGTATTCAAGCTCATCAATCTTTTCAAGAAAATGGAAGATTTATTATGCGTAGAGGGCAAAGGTCCGAAGAAATTTGTTTATCTTAGAAATTCAAAAGCATACCCAGGTGCACCGCCATTGATACTGGCAAAGAAGGAAAATAAGAAAGGGAAAGAGGTAGTGGAAGATAATGCAGATATAGGCTCTTCCGAGGAGTACTCCGATGAAGAAAGAGTGGTTCCGATAGAACTTAGTGGGAGGAATGTTGCAGTGGGGACAAATTATAATGCTAATCTGAAACAGTTCAAACATGAGCTCCAAGAGATTCTTGTAAGCTATTCGTGTCGAATTTTCTTGGGATATTTCGAGGCAATTTACCTGCAACGCTACAAAAAGCCGTTAGACTACGCACAATTCGGCGTTTATAATCTGGAAGAGCTTTTTGAGAAAGTAAGTGATGTTGTTGTGTTGCAGGAAGAAGCAGAGAGCAAGAAGAAGTTTGTGGTGGCATTAGGTGGCTAA 1491 43.19 MADSKANACYAPSYQLIRSTSDGPVAIFWDIENCPVPSDVRPEDVAGSIRMALRVHPVIKGAVMMFSAYGDFNAFPRRLREGCQRTGVKLVDVPNGRKDAADKAILVDMFLFALDNPPPSSIMLISGDVDFAPALHILGQRGYTVILVIPSGVGVSSALSNAGKFVWDWPSVARGEGFSPAMKAVMSSRGTGIADVSGYFAGVNMNDNLDGQMEEEAIVYRGISQRYYNSRDFSIVTQSVSEYNSSLIMPCLPATSRSHSLPSGLNEVSSCPISSIDQNELTWVQPGDLNGLKHQLTRLLELSGGCLPLSRVPAEYLKVFGRPLYVAEYGVFKLINLFKKMEDLLCVEGKGPKKFVYLRNSKAYPGAPPLILAKKENKKGKEVVEDNADIGSSEEYSDEERVVPIELSGRNVAVGTNYNANLKQFKHELQEILVSYSCRIFLGYFEAIYLQRYKKPLDYAQFGVYNLEELFEKVSDVVVLQEEAESKKKFVVALGG 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11391396 11392886 + Bma007460.1 Bma12g00451 91877

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00451 496 Gene3D - 417 490 IPR041966 -
Bma12g00451 496 Gene3D - 288 357 IPR041966 -
Bma12g00451 496 Pfam OST-HTH/LOTUS domain 290 355 IPR025605 -
Bma12g00451 496 Pfam OST-HTH/LOTUS domain 422 484 IPR025605 -
Bma12g00451 496 PANTHER - 20 491 - -
Bma12g00451 496 Gene3D - 17 170 - -
Bma12g00451 496 CDD LOTUS 289 358 - -
Bma12g00451 496 CDD PIN_limkain_b1_N_like 24 150 - -
Bma12g00451 496 ProSiteProfiles OST-type HTH domain profile. 288 361 IPR025605 -
Bma12g00451 496 Pfam NYN domain 24 163 IPR021139 GO:0004540
Bma12g00451 496 PANTHER LIMKAIN B LKAP 20 491 IPR024768 GO:0005777|GO:0010468|GO:1903231
Bma12g00451 496 CDD LOTUS 422 483 - -
Bma12g00451 496 ProSiteProfiles OST-type HTH domain profile. 421 495 IPR025605 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00451 - - - tcc:18607949 708.753
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g00451 Bma-Chr12:11391396 Bma14g01370 Bma-Chr14:25452390 8.22E-31 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g399 . . . . Bpe07g00379 . . Bma12g00451 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme11g00086
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005957 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 4 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00451 Bma_Chr12 FPKM 7.450521 9.952056 8.951989 11.037115 11.004441 9.033296 9.755202 10.917519 8.609084 10.946987