Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00464 TTAGGAAAAGCTCTTGCCCTAGCTCTTGGAAATAAAGGAGTATTTGTGACTGTCGTTGATTTCTCTGAAGAAAAAGGAAGGGAAGTTGCTTCTTCCATTGAAGAAAAGCATATAGAGTTCCATTCGAAGTTAGAATTTCCATGTGCTTTGTTCATAAAATGCGATGTAACAAACTCAAGAGATCTAGCACATGCTTTTGAAAGGCATTTGGCAACATATGGAGGATTGGATATATGTATTAACTGTGCAGGAATTGGCAGTGAAATACCATTCCATAAGGATCAAACAGACGGGAATCAAACATGGAGACGCACTATTGACGTCAATCTGACTGGAGTTATTGAGTGCACTCGCCTTGCGATAAAAGCCATGCAATCTGTTAAAAAAACTGGGGTGATTATCAATTTGGGTTCTGCTTCTGGTCTTTATCCAATGTATTTCGACCCTATCTATTCCGCTTCCAAAGGAGGCGTTGTTATGTTTACTAGATCACTTGTTCTTTTCAAACGTCAAGGTATTCGCATCAATGTTCTTTGCCCTGAGTTTGTGGAAACTGACATGGGTTCTAAGATTGACCCCAAATTTGTGAAACTAATGGGCGGCTTTCTTTCGATGGAAATGGTGGTCAAAGGTGCTTTTGAGTTAATTACGGATGAGAGCAAAGCTGGTGCATGCCTCTGGATTACAAATCGTCGGGGCATGGAGTACTGGCCCACGCCCATGGAAGAAAAGAAATACATGCTTCCCTCTGCTGGTTTGAGGAAGCAATCTGTATCCAGAATTTTTCCAAATATCCAACTTCCAGAAAGTTATGAAAAAATAGTTGTTCACACTCTGAGTCACAATTTTCGTAATGCAACTAACATAGTGCGGAGTCCATTGAGATTGCCAATTGAACCACATCATGTTCTTCTTAAAATTATATACGCTGGTGTAAATGCTAGTGATGTAAATTTTAGCTCTGGTCGGTATTTCAGTGGTGGCAAGGACGCTGGCTCCCATCTTCCATTTAATGCTGGTTTTGAGGCAGTGGGAATAATTGCAGCCGTAGGCGATTCTGTCTCTGGTCTACAAATTGGTACTCCGGCTGCAATGATGACATTTGGAAGTTATGCAGAATTCGTTATGGTCCCTTCGAAACACATCCTTCCTGTTACGAGACCAGATCCAGAAGTTGTTGCGATGCTAACGTCAGGGTTGACAGCATCAATTGCCCTGGAAAAGGCAGGGCATATGGAAAGGGGAAACGTAGTTCTTGTAACTGCTGCTGCAGGAGGGACTGGCCAGTTTGCCGTTCAGCTGGCTAAATTAGCTGGAAATAAGGTAGTTGCAACTTGTGGAGGTAAAGAGAAGGCCAATCTTTTAAAAGATTTGGGAGTGGATCGAGTTATAGATTATAGAGCTGAAAATATCAAAGAAGTTCTGAAAAAGGAGTATCCCAAGGGTGTTGACATCATCTATGAGTCTGTTGGTGGTGACATGTTCGATTTGTGCTTAAATGCTCTGGCTGTCTATGGACGACTCATCGTGATTGGAATGATCTCTCAGTATCAAGGAGAACATGGATGGAAACCTCTGAATTACACGGGACTGTGCGAGAAACTTTTGTCCAAAAGTCAAACTGTAGCTGGATTTTTCCTAGTGCAATATAGTCATCTATGGCAACAACATTTGGACAAACTAATCGATCTCTACTCCTCGGGACGTCTAAAGGTTTCAATTGATCCCAGAAGATTTTTGGGTCTCAATGCGGTCGCAGATGCGGTTGAGTATCTCCATTCGGGTAAAAGTGTTGGGAAGGTA 1803 42.1 LGKALALALGNKGVFVTVVDFSEEKGREVASSIEEKHIEFHSKLEFPCALFIKCDVTNSRDLAHAFERHLATYGGLDICINCAGIGSEIPFHKDQTDGNQTWRRTIDVNLTGVIECTRLAIKAMQSVKKTGVIINLGSASGLYPMYFDPIYSASKGGVVMFTRSLVLFKRQGIRINVLCPEFVETDMGSKIDPKFVKLMGGFLSMEMVVKGAFELITDESKAGACLWITNRRGMEYWPTPMEEKKYMLPSAGLRKQSVSRIFPNIQLPESYEKIVVHTLSHNFRNATNIVRSPLRLPIEPHHVLLKIIYAGVNASDVNFSSGRYFSGGKDAGSHLPFNAGFEAVGIIAAVGDSVSGLQIGTPAAMMTFGSYAEFVMVPSKHILPVTRPDPEVVAMLTSGLTASIALEKAGHMERGNVVLVTAAAGGTGQFAVQLAKLAGNKVVATCGGKEKANLLKDLGVDRVIDYRAENIKEVLKKEYPKGVDIIYESVGGDMFDLCLNALAVYGRLIVIGMISQYQGEHGWKPLNYTGLCEKLLSKSQTVAGFFLVQYSHLWQQHLDKLIDLYSSGRLKVSIDPRRFLGLNAVADAVEYLHSGKSVGKV 601
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 12158878 12186944 + Bma030502 Bma12g00464 91890

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00464 601 SMART PKS_ER_names_mod 281 601 IPR020843 GO:0016491
Bma12g00464 601 Pfam short chain dehydrogenase 1 192 IPR002347 -
Bma12g00464 601 Pfam Alcohol dehydrogenase GroES-like domain 300 365 IPR013154 -
Bma12g00464 601 Pfam Zinc-binding dehydrogenase 426 560 IPR013149 -
Bma12g00464 601 Gene3D - 276 601 - -
Bma12g00464 601 CDD Mgc45594_like 270 601 - -
Bma12g00464 601 PANTHER BNAA08G02470D PROTEIN 79 601 - -
Bma12g00464 601 PANTHER SHORT-CHAIN DEHYDROGENASE/REDUCTASE 79 601 - -
Bma12g00464 601 Gene3D - 1 248 - -
Bma12g00464 601 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1 236 IPR036291 -
Bma12g00464 601 Gene3D - 394 572 - -
Bma12g00464 601 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 74 85 IPR002347 -
Bma12g00464 601 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 151 170 IPR002347 -
Bma12g00464 601 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 131 139 IPR002347 -
Bma12g00464 601 SUPERFAMILY GroES-like 288 419 IPR011032 -
Bma12g00464 601 PRINTS Glucose/ribitol dehydrogenase family signature 125 141 IPR002347 -
Bma12g00464 601 PRINTS Glucose/ribitol dehydrogenase family signature 74 85 IPR002347 -
Bma12g00464 601 PRINTS Glucose/ribitol dehydrogenase family signature 151 170 IPR002347 -
Bma12g00464 601 PRINTS Glucose/ribitol dehydrogenase family signature 171 188 IPR002347 -
Bma12g00464 601 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 391 569 IPR036291 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00464 - - - jre:108981417 961.444
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma11g00377 Bma-Chr11:4088705 Bma12g00464 Bma-Chr12:12158878 1.91E-22 dispersed
Bma12g00464 Bma-Chr12:12158878 Bma14g01532 Bma-Chr14:30956592 4.58E-29 dispersed
Bma14g01793 Bma-Chr14:38531797 Bma12g00464 Bma-Chr12:12158878 5.75E-15 dispersed
Bma15g00668 Bma-Chr15:10582355 Bma12g00464 Bma-Chr12:12158878 9.54E-12 dispersed
Bma12g00464 Bma-Chr12:12158878 Bma14g01516 Bma-Chr14:30649064 4.19E-29 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g430 . Blo15g00737 Bda06g01055 . Bpe07g00392 . . Bma12g00464 . . . . . . . . . . . . . . . . . . . . . . . Cone12ag1101 Cone8ag1142 . . . . . . . . . . . . . . . . . . . . . Cpe14g00299 Cpe01g00449 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007124 2 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00464 Bma_Chr12 FPKM 2.255599 3.110685 4.134285 5.196404 2.828911 3.031205 3.074623 4.220561 5.727713 4.988464