Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00469 ATGGCGCAACCTACCAACGGTGCTGATCTGAATCCACCTCCACATCAGCATCAACAGTGGGCGCAGCCGCATCAACATCAGCAGCAGTGGATGGCTATGCAGTATCCTGCGGCGGCCATGGCTATGATGCAGCAGCAGATGATGATGTACCCGACGCAGCATTATATGGGCTACTCGCACTACCCGTATCAGCAGCAAGCTCAGCTTCATCAACAGCAAAAACAACAGGTTCAGTGGCAGGCTTCAGCGGACGAAGTTAAGACGATCTGGGTCGGCGACCTTCATCATTGGATGGATGAAAACTACCTCCATAGCTGCTTCGCTTACACCGGCGAGGTCTCTTCTGTTAAGGTTATACGCAATAAACAGACAGGACAGTCTGAAGGCTATGGATTTATTGAGTTTTATTCGCACCCAATCGCTGAGAAAGTTCTGCAGAACTATAATGGAGCTATAATGCCAAATACAGAGCAGCCTTTTCGTCTTAACTGGGCAACCTTTAGTTCAAATGATAAGAAAATAGACAGTCGCTCTGATTTATCCATATTTGTTGGTGATTTGGCCACAGATGTTACAGATTCTGTGTTGCAAGAAACTTTTGGGAGCCGATATCCATCCGTGAAGGGAGCAAAAGTTGTGATTGATGCAAACACGGGCCGTTCGAAAGGTTATGGATTTGTCAGGTTTAGTGATGAAAATGATAGATCAAGGGCGATGACTGAGATGAATGGAGTGCATTGTTCGAGTAGGCCGATGCGTATTGGTGTTGCTACTCCAAAGAAAGCAGCTGGCTACCAGCAAAATTATTCTTCACAAGCTTTGGTTTTGGCTGGTGGACATGGATTAAATGATTCTGCAGCTCATGGTTCGCAATATGACAGCGAAGCAAATACTACAACTATATTTGTTGGAGGGCTTGATTCAGATGTTAATGATGAAGATCTGAGACAGCCATTCTCTCAATTTGGTGAGGTTGTCTCTGTGAAAATACCTGCTGGAAAAGGATGTGGGTTCGTTCAATTTGCTGACAGAAAGAATGCTGAGGATGCAATGCAAGGTTTGAATGGAACCATAATCGGTAAGCAGACAGTTCGTCTTTCTTGGGGTCGTAGTCCAGGAAATAAGCAGTGGAGATCGGAATCCAGGAACCAGTGGAACGGAACCCGCTATTAA 1173 45.61 MAQPTNGADLNPPPHQHQQWAQPHQHQQQWMAMQYPAAAMAMMQQQMMMYPTQHYMGYSHYPYQQQAQLHQQQKQQVQWQASADEVKTIWVGDLHHWMDENYLHSCFAYTGEVSSVKVIRNKQTGQSEGYGFIEFYSHPIAEKVLQNYNGAIMPNTEQPFRLNWATFSSNDKKIDSRSDLSIFVGDLATDVTDSVLQETFGSRYPSVKGAKVVIDANTGRSKGYGFVRFSDENDRSRAMTEMNGVHCSSRPMRIGVATPKKAAGYQQNYSSQALVLAGGHGLNDSAAHGSQYDSEANTTTIFVGGLDSDVNDEDLRQPFSQFGEVVSVKIPAGKGCGFVQFADRKNAEDAMQGLNGTIIGKQTVRLSWGRSPGNKQWRSESRNQWNGTRY 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 12498613 12504315 + Bma007487.1 Bma12g00469 91895

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00469 390 CDD RRM2_SECp43_like 179 258 - -
Bma12g00469 390 CDD RRM3_NGR1_NAM8_like 299 369 - -
Bma12g00469 390 SUPERFAMILY RNA-binding domain, RBD 162 281 IPR035979 GO:0003676
Bma12g00469 390 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47B 18 389 - -
Bma12g00469 390 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 87 167 IPR000504 GO:0003723
Bma12g00469 390 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 89 157 IPR000504 GO:0003723
Bma12g00469 390 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 301 364 IPR000504 GO:0003723
Bma12g00469 390 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 182 249 IPR000504 GO:0003723
Bma12g00469 390 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 180 259 IPR000504 GO:0003723
Bma12g00469 390 CDD RRM1_SECp43_like 88 168 - -
Bma12g00469 390 Gene3D - 282 390 IPR012677 -
Bma12g00469 390 MobiDBLite consensus disorder prediction 369 390 - -
Bma12g00469 390 MobiDBLite consensus disorder prediction 1 24 - -
Bma12g00469 390 Gene3D - 43 178 IPR012677 -
Bma12g00469 390 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 18 389 - -
Bma12g00469 390 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 299 371 IPR000504 GO:0003723
Bma12g00469 390 Gene3D - 179 256 IPR012677 -
Bma12g00469 390 SMART rrm1_1 88 163 IPR000504 GO:0003723
Bma12g00469 390 SMART rrm1_1 300 367 IPR000504 GO:0003723
Bma12g00469 390 SMART rrm1_1 181 255 IPR000504 GO:0003723
Bma12g00469 390 SUPERFAMILY RNA-binding domain, RBD 49 172 IPR035979 GO:0003676
Bma12g00469 390 SUPERFAMILY RNA-binding domain, RBD 294 388 IPR035979 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00469 - - - csv:101215609 549.28
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00992 Bma-Chr1:9976444 Bma12g00469 Bma-Chr12:12498613 1.09E-06 dispersed
Bma01g02286 Bma-Chr1:80048187 Bma12g00469 Bma-Chr12:12498613 6.42E-160 dispersed
Bma04g00177 Bma-Chr4:1500509 Bma12g00469 Bma-Chr12:12498613 1.09E-146 dispersed
Bma07g00081 Bma-Chr7:1624117 Bma12g00469 Bma-Chr12:12498613 2.47E-10 dispersed
Bma11g00096 Bma-Chr11:1010734 Bma12g00469 Bma-Chr12:12498613 1.97E-10 dispersed
Bma12g00469 Bma-Chr12:12498613 Bma13g01081 Bma-Chr13:43645877 1.35E-123 dispersed
Bma15g00312 Bma-Chr15:3013988 Bma12g00469 Bma-Chr12:12498613 1.84E-08 dispersed
Bma12g00469 Bma-Chr12:12498613 Bma12g00472 Bma-Chr12:12613087 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g447 Blo02g00819 . Bda06g01045 . . . . Bma12g00469 . . Cma02g00443 Cma20g00892 Car02g00300 Car20g00769 . . . . . . . . . . . . . . . . . Cone6ag0064 Cone9ag0078 Cone14ag1139 Cone15ag1157 Lsi10g00304 . Chy11g00443 . . . . . . . . . . Cmo02g00452 Cmo20g00899 . . . . . Cpe05g01219 . . . . . . . Cla09g01707 Cam09g1803 Cec09g1863 Cco09g1956 . . Cre01g0704 . Csa02g01195 . Cme11g00517
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000461 5 3 1 4 1 5 5 5 5 4 4 4 5 3 3 4 5 5 5 5 3 3 3 3 3 4 3 6 6 2 117
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00469 Bma_Chr12 FPKM 6.176136 7.872412 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0