Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00482 ATGCCTGTTGACATTGATGAAATACCGACTGCATCTTTAGTAGTTTCAGCTTCTCACTTCAATAGTTTATTATTACCAATTGTACAACCAATCAGGAAAAAATCCATGCGGGGGACAAAAATGAGTGCTAAATCAGTTGTTTCTTCAAGTTCTGTGACTCCGAAAGTTGTGACTCCGAAAGTTGATTCAGATTGCCCAGATTCCCCTAGGATAGAAATCAATTACTCGAATGTCTCCAAGTATTCTGTACCTGATGATGACTGTCTGGTCAAGTTGTTTGATGAATTTGAAAGCTCTCATTCACTGGAACTTTGTGACAAATCGAAAGAAAAGTTAGAGAGTGAGATAGAATTAGCTGAAGACGAAAACGACGAAAGTTCTGAAAGTGATATGATTTCTCCCGATTGGGGATCAGCAGATTCCATGGTAAGTTCTTCATCCGAGATTGTTTTGTTCAAAGAAGAAGAGCATGAGAACAAAGAGCAATCGGCTGTTACTTTTTGTGATCCTGATTCAAACGAAATAATCAGCGAAGGATCCAGTCAATATGAGACACAAAGTATCCAAGTGAGGCCAAAGGCTCAAAGAAAGGGGAAAAAGGGATCGTGTTATCGATGTCTGATAGGAAACCAGCTGACAGAGAAGGAAATGTGTATTGTTTGTGGAGCAAAGTATTGTCGTAAGTGTGTGTTAAGAGAAATGGGGTCAATGCCTGAAGGGAGAAAATGTGTGAGTTGCATCGGCTTTCATATCGATGAATTGAGACGACAAAGCTTGGGAAAGTGCTCGAGATTGCTTAAAAAGATGCTTTCTGATATGGAGATCAGAATTATTATGAGGGCCGAGATGGAGAGTCTGGTGAATCAGCTACCACCCAAGCTTGTTTTGGTGAATGATATCCCTTTAAGTAAAGAGGAACTTTGTATTTTGCAAAGTTGCTCAAATCCACCAAAAAAACTCAAACCAGGATTATTTTGGTATGACAAAGTATCTGGGTTTTGGGGACAGAAAGGAAAGCAGCCGTGTCAGATTATCAGCCCACACTTAAATGTTGGGGGTCCTATCAAGAAAGATGCTAGCAATGGAAACACGAATGTCTTTATAAACAGTAGGGAGATCACTATGAAGGAGCTCTATATGCTCAAGGTGGCAGGTGTGCCTTGTGAAGGAAGTCCTTCTTTTTGGCTAAACGCAGATGGGTCTTATCAGGAAGAGGGAATGAATAAAGTCAAGGGAAACATATGGGACAAGGGTAAAACTAAGCTGGTTTGTGCTGTATTATCTTTGCCATTGCCGCATAATCCAACGGATTCCAGAGCGGAAGAAATGAAGATAGTTGCCTCCAATTCAATCAGTAAATCAACCCTTTATAGGTTTCTCCTTGTTGGGTATAATAAATCTGGCACCAGTACTATTTTTAAGCAGGCTAAGAGTCTGTACAACATTCCTTTCTCCAAAGATGAGCGCCAAAACATTAAGGCCATGATCCAAAGAAATTTGTATGGATATATTGGAATATTGCTTGAGGGCCGTGAACGATTTGAAGAAGAGGTGTCTATTGAGAGGAAAGTGCCAAGATTCAATCAGTTGGATCAGTTAGCTGCGAGGAACATTGATGAGAGAACAACTTACGTGATTGGCCCAAGACTGAAAGCTTTTTCAGATTGGCTCCTAAAGGTCATGGTGTGCGGAAATTTGGAGGCTATATTTCCCGCTGCTACTCGAGAATACGCTCCATTTATTGAGGATTTATGGAGAGATCCTGCCTTTCAAGCTACATACATCCGAAGAAATGAATTAGAACTTCTACCTGTTATAGCTACTTATTTTCTTGATCGGGCTGTGGAAATTTCAAAGATCGATTACGAGCCGTCCGACATTGACATTTTATATGCTGAAGGAATTTCAGCTTCTAACGGTCTGAGTGACGTCAAATTTTCATTCCCAGAATCACCACAGGGTTTTGTTCTTGATCAACTATACGAGCATGATCCTTCTCAAAGATACCAGCTCATTAGAGTTCATCCCAATAGCCTCGGAGAGAATTGCAAATGGCTGGAAATGTTTGAAAATGTCGATATTGTTCTATTTTGCGTCGCCTTGACAGATTACAACGAGTTTCACGACGATCAATTTGGAAATTCTATTAACAAGATGATAGCGAGTAAGAAACTCTTCGAAAGCATCATTCGACGTCCGACCCTGAAGAAGAAACACTTTCTTCTCATTCTCAACAAGTTTGACTTGTTCGAGGAAAAAATCAAGCAAGTTCCTCTCTCTCGATGTGAATGGTTCGACGACTTCAATCCGCTGATTAGCTCCCATTTTAAAGTCAGCGGATCAAACGGCACAAATACTTCGTTGGCTCATCAAGCTTTTCAATACATTGCAGTGAAGTTTAAGAGACTCTTCAGCTCTTACGCAAATAACAAGCTTTTTGTTTCGTTGAGTACTGGAATGGAGCCTGATTCTGTAAATGAAACTCTAAGATATGCAAGGGAGATCCTTAAATGGCGGAAATTGGAGCCTGCCTTTGTTTCCGAGTTGTCGTCTATGAACACTGAGGCCAGCACTTCCTGCTAA 2583 40.65 MPVDIDEIPTASLVVSASHFNSLLLPIVQPIRKKSMRGTKMSAKSVVSSSSVTPKVVTPKVDSDCPDSPRIEINYSNVSKYSVPDDDCLVKLFDEFESSHSLELCDKSKEKLESEIELAEDENDESSESDMISPDWGSADSMVSSSSEIVLFKEEEHENKEQSAVTFCDPDSNEIISEGSSQYETQSIQVRPKAQRKGKKGSCYRCLIGNQLTEKEMCIVCGAKYCRKCVLREMGSMPEGRKCVSCIGFHIDELRRQSLGKCSRLLKKMLSDMEIRIIMRAEMESLVNQLPPKLVLVNDIPLSKEELCILQSCSNPPKKLKPGLFWYDKVSGFWGQKGKQPCQIISPHLNVGGPIKKDASNGNTNVFINSREITMKELYMLKVAGVPCEGSPSFWLNADGSYQEEGMNKVKGNIWDKGKTKLVCAVLSLPLPHNPTDSRAEEMKIVASNSISKSTLYRFLLVGYNKSGTSTIFKQAKSLYNIPFSKDERQNIKAMIQRNLYGYIGILLEGRERFEEEVSIERKVPRFNQLDQLAARNIDERTTYVIGPRLKAFSDWLLKVMVCGNLEAIFPAATREYAPFIEDLWRDPAFQATYIRRNELELLPVIATYFLDRAVEISKIDYEPSDIDILYAEGISASNGLSDVKFSFPESPQGFVLDQLYEHDPSQRYQLIRVHPNSLGENCKWLEMFENVDIVLFCVALTDYNEFHDDQFGNSINKMIASKKLFESIIRRPTLKKKHFLLILNKFDLFEEKIKQVPLSRCEWFDDFNPLISSHFKVSGSNGTNTSLAHQAFQYIAVKFKRLFSSYANNKLFVSLSTGMEPDSVNETLRYAREILKWRKLEPAFVSELSSMNTEASTSC 860
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 13972938 13979164 - Bma007516.1 Bma12g00482 91908

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00482 860 PANTHER EXTRA-LARGE GUANINE NUCLEOTIDE-BINDING PROTEIN 2 1 858 - -
Bma12g00482 860 Gene3D - 486 629 IPR011025 GO:0007165
Bma12g00482 860 Pfam G-protein alpha subunit 448 835 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Bma12g00482 860 ProSiteProfiles G-alpha domain profile. 455 847 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Bma12g00482 860 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 455 841 IPR027417 -
Bma12g00482 860 Gene3D - 630 845 IPR027417 -
Bma12g00482 860 SUPERFAMILY Transducin (alpha subunit), insertion domain 484 632 IPR011025 GO:0007165
Bma12g00482 860 Coils Coil 102 129 - -
Bma12g00482 860 MobiDBLite consensus disorder prediction 113 139 - -
Bma12g00482 860 PANTHER GTP-BINDING PROTEIN ALPHA SUBUNIT 1 858 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Bma12g00482 860 SMART galpha_1 435 846 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00482 - - - mcha:111017232 940.258
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g01165 Bma-Chr6:48783307 Bma12g00482 Bma-Chr12:13972938 1.25E-09 dispersed
Bma01g02190 Bma-Chr1:78793558 Bma12g00482 Bma-Chr12:13972938 1.17E-46 transposed
Bma09g00324 Bma-Chr9:28103984 Bma12g00482 Bma-Chr12:13972938 0 transposed
Bma12g00240 Bma-Chr12:3083173 Bma12g00482 Bma-Chr12:13972938 5.27E-67 transposed
Bma12g01280 Bma-Chr12:45799646 Bma12g00482 Bma-Chr12:13972938 0 transposed
Bma12g00482 Bma-Chr12:13972938 Bma05g00491 Bma-Chr5:21592103 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g526 . Blo15g00719 . . Bpe07g00403 . . Bma12g00482 . . Cma02g00427 Cma20g00879 Car02g00284 Car20g00758 . . . . . . . . . . . . . . . . . Cone12ag1124 Cone8ag1168 . . Lsi10g00329 . Chy11g00419 . . . . . . . . . Sed05g3643 Cmo02g00428 Cmo20g00886 . . . . . Cpe05g01234 Bhi10g02061 Tan05g1365 Cmetu11g1444 . Hepe08g1048 . . Cla09g01736 Cam09g1830 Cec09g1890 Cco09g1983 . . Cre01g0680 . Csa02g01217 . Cme11g00480
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004689 1 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 4 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00482 Bma_Chr12 FPKM 14.095239 17.049471 20.105965 20.160147 9.054385 9.414014 9.474134 25.265699 27.054071 30.218231