Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00483 ATGATTAACGATAAAGGTCCAAACATAGATGCTGGTAAAAGCAAACTTCGGAGAGGAAAGCTCGGAGTTTTCATGAATTCCGAACCTGCTATGCTTTCCTCCCGAAGCGACGGAGATTCCAATCATTTTCGAACCCGTGGTGACATTTTCGACCATTCTCACAGGGTAAGTAATGCTTCAGCCATCAGTACTTTCTACTACGAGAAGTCACCGGCCAGCGAGGAGGAGTCTCCGTACGATCTTTCACCCTGGAATCAAACTTCTCCGCTGGACAAATCTCCATGGGCATCATCTTCTCCCACCAGCCCTTTCGAACGTAATCAACCAATTGACGGCCTCATCGGTTCGCTAGTGCGTAAAGAGGGTCACATATATTCGTTAGCAGTTTCCGGCGACTTGTTATACACAGGATCCGATAGCAAAAACATTCGAGTCTGGAAGAACTTGAAGGAATTCACTGGGTTTAAGTCTGACAGTGGGTTGGTAAAAGCCATTATTATAAGCGGAGGAAGAATCTTTACCGGTCATCAAGATGGGAAAATTCGAGTCTGGAAAGTTTCTCAGAAAACTCCAAGTTTCCATAAACATATCGGGAACTTACCCTCTTTCACAGACGTCGTTAAAAGCTCAATAAACCGGAATAACTATGTCAAAGTCCGTCGAAATCGGAATGTTTTACGAATAAAGCATTTTGATGCAGTTTCATGCATGAGCTTGAACGAAGAATTCGGACTCCTATACTCAGGCTCATGGGATAGAACTGTGAAAGTATGGCGAATAGCAGACTCAAAGTGCTTGGAATCGATCACAGCCCATGAAGACGCCATTAATTCCATTGTTCAGGCCTTCGATGGCCTCCTCTTCACCGGCTCGGCTGACGGGACAGTGAAAGTGTGGAGGAGGGAGTTTCAGAGGAGAAGAACGAAGCATTTTCTGCTACAAGAGTTAATGAAACAAGAAAACGCGGTTACAGCTCTTGCCGTGAACCGGTCAGCTGGCGTTCTCTACGGCGGAACCTCCGATGGGCTCGTGAATTTCTGGCAGAGAAAGAAGCGGCTATGTCACGGCGGCGTCTTGAGGGGCCATAGATCGGCGGTTTTATGCTTAGCGTCGGCAGGGAAGCTGGTTTTCAGTGGGTCTGCAGATAAGAGCATATGCGTATGGAGGAGAGAAGAGACAAGCGGAGTCCATATCGGCTTAGCTGTTCTGAGCAGCCACACTGGTCCAGTCAAGTGCTTGGCCGTGGAGGAAGATCACGAAGATGACGACGATCGAAATTCGAACATGGAAGCAGATCAACGGTGGATAGTGTACAGTGGGAGTTTGGATAAGTCCGTAAAGGTATGGCGCGTTTCAGAGAATCCGCCTGAACTCAGCCCGTCGCTATACAAATAG 1395 47.53 MINDKGPNIDAGKSKLRRGKLGVFMNSEPAMLSSRSDGDSNHFRTRGDIFDHSHRVSNASAISTFYYEKSPASEEESPYDLSPWNQTSPLDKSPWASSSPTSPFERNQPIDGLIGSLVRKEGHIYSLAVSGDLLYTGSDSKNIRVWKNLKEFTGFKSDSGLVKAIIISGGRIFTGHQDGKIRVWKVSQKTPSFHKHIGNLPSFTDVVKSSINRNNYVKVRRNRNVLRIKHFDAVSCMSLNEEFGLLYSGSWDRTVKVWRIADSKCLESITAHEDAINSIVQAFDGLLFTGSADGTVKVWRREFQRRRTKHFLLQELMKQENAVTALAVNRSAGVLYGGTSDGLVNFWQRKKRLCHGGVLRGHRSAVLCLASAGKLVFSGSADKSICVWRREETSGVHIGLAVLSSHTGPVKCLAVEEDHEDDDDRNSNMEADQRWIVYSGSLDKSVKVWRVSENPPELSPSLYK 464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 14084881 14086275 - Bma007519.1 Bma12g00483 91909

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00483 464 Gene3D - 108 201 IPR015943 GO:0005515
Bma12g00483 464 Gene3D - 204 459 IPR015943 GO:0005515
Bma12g00483 464 ProSiteProfiles Trp-Asp (WD) repeats profile. 269 299 IPR001680 GO:0005515
Bma12g00483 464 MobiDBLite consensus disorder prediction 76 107 - -
Bma12g00483 464 SMART WD40_4 396 450 IPR001680 GO:0005515
Bma12g00483 464 SMART WD40_4 221 259 IPR001680 GO:0005515
Bma12g00483 464 SMART WD40_4 262 300 IPR001680 GO:0005515
Bma12g00483 464 SMART WD40_4 309 348 IPR001680 GO:0005515
Bma12g00483 464 SMART WD40_4 110 147 IPR001680 GO:0005515
Bma12g00483 464 SMART WD40_4 352 389 IPR001680 GO:0005515
Bma12g00483 464 SMART WD40_4 148 185 IPR001680 GO:0005515
Bma12g00483 464 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 269 299 - -
Bma12g00483 464 SUPERFAMILY WD40 repeat-like 118 456 IPR036322 GO:0005515
Bma12g00483 464 ProSiteProfiles Trp-Asp (WD) repeats profile. 359 398 IPR001680 GO:0005515
Bma12g00483 464 ProSiteProfiles Trp-Asp (WD) repeats profile. 227 268 IPR001680 GO:0005515
Bma12g00483 464 PANTHER EN/SPM-LIKE TRANSPOSON PROTEIN-LIKE 13 459 - -
Bma12g00483 464 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 227 260 - -
Bma12g00483 464 CDD WD40 121 450 - -
Bma12g00483 464 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 13 459 IPR045182 -
Bma12g00483 464 PRINTS G protein beta WD-40 repeat signature 287 301 IPR020472 -
Bma12g00483 464 PRINTS G protein beta WD-40 repeat signature 437 451 IPR020472 -
Bma12g00483 464 PRINTS G protein beta WD-40 repeat signature 246 260 IPR020472 -
Bma12g00483 464 MobiDBLite consensus disorder prediction 79 106 - -
Bma12g00483 464 Pfam WD domain, G-beta repeat 264 299 IPR001680 GO:0005515
Bma12g00483 464 Pfam WD domain, G-beta repeat 401 449 IPR001680 GO:0005515
Bma12g00483 464 Pfam WD domain, G-beta repeat 121 147 IPR001680 GO:0005515
Bma12g00483 464 Pfam WD domain, G-beta repeat 148 185 IPR001680 GO:0005515
Bma12g00483 464 Pfam WD domain, G-beta repeat 357 388 IPR001680 GO:0005515
Bma12g00483 464 Pfam WD domain, G-beta repeat 229 258 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00483 - - - jre:109010225 584.334
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00090 Bma-Chr5:2919448 Bma12g00483 Bma-Chr12:14084881 2.87E-166 dispersed
Bma05g00099 Bma-Chr5:3229474 Bma12g00483 Bma-Chr12:14084881 5.59E-166 dispersed
Bma12g00483 Bma-Chr12:14084881 Bma13g00752 Bma-Chr13:24327032 2.09E-77 dispersed
Bma12g00483 Bma-Chr12:14084881 Bma04g00193 Bma-Chr4:1718721 1.65E-177 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g527 . Blo15g00718 Bda06g01024 Bda08g01318 Bpe07g00404 Bpe12g00071 . Bma12g00483 Cmo19g00652 Cmo11g01329 . . . . Sed11g0992 . . Bhi05g01171 Tan02g1913 Cmetu03g1602 . Hepe02g0551 . . Cla02g00560 Cam02g0588 Cec02g0589 Cco02g0600 Clacu02g0586 Cmu02g0584 Cre02g0914 . . . . . Csa07g00816 . . . Blo13g00559 Bda15g00021 Bda14g00532 . . . . . . . Cma11g01780 Cma19g00639 . . . . . . . . . . . . . . . . . . . . Chy01g00013 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009507 6 1 2 1 2 1 0 1 1 1 1 1 2 0 1 2 1 0 0 1 1 1 1 1 0 0 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00483 Bma_Chr12 FPKM 3.382609 3.880768 24.737226 27.039291 9.596889 9.922906 8.748389 12.413857 13.755413 11.792829