Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00487 ATGGTGAAGAGTCGGGGTTATTTGAGAATGCCGACGGACAGAGATGCCAGTAGCCGCCTTCTCGATGCTGATCTAAGGGAATTTGGAAATGCTGCTAAGAGGCTCGCCAGTGATGCGATCAAGCTCGGTAGCTTTGGAATCGGAACCTCTATCATCGAATGGGTCGCTACCGTTGCCGCTATTTATTTGCTGGTCTTGGATAGAACGAACTGGAAGACAAATATTCTTACCGGATTACTTATCCCTTACATATTTTTTAGTCTTCCTTCTATAGTCTTCAGCTTCTTAAGAGGCCAAGTTGGGAGATGGATTGCCTTTGTCGCTGTTATTTTGCGTATCTTCTTCCCAAAGCACTTTCCAGATTGGCTGGAACGTATTGCTGATTGGCTGGAACGTATTGCAGATTGGCTGGAACTACCTGCGGCTCTGATTGTTTTAATAGTAGTGGCTCCTAGTTTAATTGCAGACACTTTTAGGGATGACTGGGTCGGCATAATAGTTTGTCTTGTCATAGCAGGTTATTTGCTTCAAGAACACATCAGGGCTGCTGGAGGGTTCAAAAATTCATTCACCAAAGCAAATGGCATTTCAAACACAGTTGGTATTATCATTCTCATTGTTTACCCCATTTGGGCTCTGTTCATTTATTTCTTATAG 657 43.38 MVKSRGYLRMPTDRDASSRLLDADLREFGNAAKRLASDAIKLGSFGIGTSIIEWVATVAAIYLLVLDRTNWKTNILTGLLIPYIFFSLPSIVFSFLRGQVGRWIAFVAVILRIFFPKHFPDWLERIADWLERIADWLELPAALIVLIVVAPSLIADTFRDDWVGIIVCLVIAGYLLQEHIRAAGGFKNSFTKANGISNTVGIIILIVYPIWALFIYFL 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 14362340 14376868 + Bma007526.1 Bma12g00487 91913

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00487 218 Pfam Cold acclimation protein WCOR413 16 205 IPR008892 GO:0016021
Bma12g00487 218 PANTHER COLD-REGULATED 413 PLASMA MEMBRANE PROTEIN 2 5 125 IPR008892 GO:0016021
Bma12g00487 218 PANTHER COLD-REGULATED 413 PLASMA MEMBRANE PROTEIN 1-RELATED 5 125 - -
Bma12g00487 218 PANTHER COLD-REGULATED 413 PLASMA MEMBRANE PROTEIN 1-RELATED 132 217 - -
Bma12g00487 218 PANTHER COLD-REGULATED 413 PLASMA MEMBRANE PROTEIN 2 132 217 IPR008892 GO:0016021
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00487 - - - egr:104452661 300.056
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00497 Bma-Chr5:22683019 Bma12g00487 Bma-Chr12:14362340 3.00E-126 dispersed
Bma12g00487 Bma-Chr12:14362340 Bma15g00856 Bma-Chr15:22433298 8.14E-79 dispersed
Bma12g00487 Bma-Chr12:14362340 Bma05g00496 Bma-Chr5:22577452 1.87E-127 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g533 . Blo15g00717 Bda06g01022 Bda08g00910 Bpe07g00407 . . Bma12g00487 . . Cma02g00426 Cma20g00878 Car02g00283 Car20g00757 . . . . . . . . . . . . . . . . . . . Cone3ag1128 Cone10ag1137 Lsi10g00330 . Chy11g00418 . . . . . . . . . Sed01g0322 Cmo02g00427 Cmo20g00885 . . . . . Cpe05g01235 Bhi10g02059 Tan05g1361 Cmetu11g1465 . Hepe08g1047 . . Cla09g01737 Cam09g1831 Cec09g1891 Cco09g1984 . . Cre01g0679 . Csa02g01218 . Cme11g00479
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001642 8 2 3 5 3 2 3 2 2 1 1 1 3 2 2 3 1 2 3 2 2 2 2 2 1 2 2 2 2 1 69
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00487 Bma_Chr12 FPKM 2.428251 1.514175 1.622514 1.503436 0.0 0.407016 0.969127 1.926883 1.727645 2.777694