Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00489 ATGGCGGCACCTGATCCACCACTCCATCAATGGGCCCCAGCTCCTTCTCCAATCACCACCACCCAATTCCTCCACCAATCCACGTCTCCACCGTCTAAATTGCCCATCGACTTCAGCCCCCCATTGATCGCCATGGTCGTCGTCGTCGCCACCGCTTTCTTAATCGTCACCTACTCCCGCCTCATCTCCCGCCACATCATTCCTCCTATCCTGCAACTCCTCCGCCGCCCTCATCGCCGCTGGAGACGCTGGCGCCGCCGTCGCCGCCGGTCTAGGTCTTACCTCCCATCTTCCTCGGAAGGAGATTTGGACTCTTTTCCATTTGACTCTCCGTTCTTCGAATCGGCGGATGCCTTTCCGGTTTTCTCGCCGTATGGACTGGATGAGTCTGTGATTAAGACCATTCCTCTTTCCATTTATACGGCGAAGACTCGCCGTGAGAGCCGTGACTGCGCTGTTTGTCTCCTCGAGTTTGAAGAGGACGACTACGTACGTACGCTTCCTGTGTGTTCTCACACGTTTCATGTAGATTGCATAGATATATGGCTCCGGTCCCACGCTAACTGCCCACTATGCCGTGCTGTGATATTCCGGCCAGAATCTCCATTCATGCCGATGATGGCGGCCAGAATAAGGCCGAGCCTCGATGAAACTTTCTTGCGGAACATCGTCCTGGAGCCTCTCGTTGAGGCTCCGCCGGAATTTCAAACTGCAGTGTCCGAGATCACGCCGTGCATTGAAGAACCACAGCATCGGAACTCTGAGGATCGGATTAACACTCGAGATTTCTTGTTGAAGCGTTCGTATTCGTTCGGATTTGAACGGACCTTGGCGTCGGAGAGAATGGTGTTAGAGCCCGCGACAGCATCTCCTTGGCGGTACCGTCGTGGAAGTTTCTGGAGCAAAAGACCATCGCCGTTTGGATCTTTAACGAAGGCTAGAGTATTCTCATTCAGATATTACAGGGGAATGAAATCGCCGTTCTTTAGAAGAAGGGGATTCTTCCCGCTATCGGAGTCAAGCGTCCGGTACTCAGGCGGAGGAAGCGGCGGCGGGGGAGGGTCGTCGCGGCGGAGCAAGTCAATGACGAGCCCGATGTTTCTGAGATCATTCGGCGCGGGGGGAGGAGCGGCGGGGTTCTCCTCGAGCCGACTCAGGTGCGGGGATCCGGAGGCCCTGCTGTCACCGGAGAGGTTCAATAGAAGATAG 1209 55.5 MAAPDPPLHQWAPAPSPITTTQFLHQSTSPPSKLPIDFSPPLIAMVVVVATAFLIVTYSRLISRHIIPPILQLLRRPHRRWRRWRRRRRRSRSYLPSSSEGDLDSFPFDSPFFESADAFPVFSPYGLDESVIKTIPLSIYTAKTRRESRDCAVCLLEFEEDDYVRTLPVCSHTFHVDCIDIWLRSHANCPLCRAVIFRPESPFMPMMAARIRPSLDETFLRNIVLEPLVEAPPEFQTAVSEITPCIEEPQHRNSEDRINTRDFLLKRSYSFGFERTLASERMVLEPATASPWRYRRGSFWSKRPSPFGSLTKARVFSFRYYRGMKSPFFRRRGFFPLSESSVRYSGGGSGGGGGSSRRSKSMTSPMFLRSFGAGGGAAGFSSSRLRCGDPEALLSPERFNRR 402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 14446636 14447844 - Bma007529.1 Bma12g00489 91915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00489 402 MobiDBLite consensus disorder prediction 376 402 - -
Bma12g00489 402 SMART ring_2 151 192 IPR001841 -
Bma12g00489 402 Pfam Ring finger domain 150 193 IPR001841 -
Bma12g00489 402 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 10 373 IPR044675 -
Bma12g00489 402 SUPERFAMILY RING/U-box 131 199 - -
Bma12g00489 402 CDD RING-H2_PA-TM-RING 150 193 - -
Bma12g00489 402 ProSiteProfiles Zinc finger RING-type profile. 151 193 IPR001841 -
Bma12g00489 402 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 10 373 - -
Bma12g00489 402 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 121 197 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g00489 Bma-Chr12:14446636 Bma14g00158 Bma-Chr14:2167625 1.21E-25 dispersed
Bma12g00489 Bma-Chr12:14446636 Bma04g00744 Bma-Chr4:7997018 7.75E-25 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00489 - K19041 csv:101206300 556.984