Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00495 ATGGATGATTATTATATCAGCGATGAGGATTACCATGACTCCGATCAAGACTTTGAGGGTCTTGAGAACGATGAGTCTGATTTTCGTTCGGTTGCTGCAAAGGGTTCCACGACTAAGGTGATTACAAAAGAGTCTCTTCTTGCAGCTCAGAGAGATGATTTGCGTAGAGTAATGGATTTGCTGTCTCTAAGGGAGCATCATGCCAGAACGCTACTAATTCATTATCGTTGGGATGTGGAGAATTTGTTTGCTGTGCTTGTTGAGAAAGGAAAATCCTCCTTATTCGCCGCAGCTGGTGTTCGTGTGTCTGAGCACCCAAATCTTGATGCATCAGCCCCTACTTCTACTCTGACCTGTGGTGTCTGCATGGAGGAACTAGCCAGTAAGAAAGCAACAGTGATGGATTGTGGCCATTGCTTCTGCAACGACTGTTGGACAGAGCATTTTATTGTTAAAATAAATGAAGGTCAAAGTCGGCGCATCAGATGTATGTCATACAAGTGTAATGCTATCTGTGATGAGTCTGCGGTTAGAAGCCTAGTAAGTCAAAGGCACCCAGACCTTGCAGATAAATTTGATCGCTTTCTTCTTGAGTCATATATTGAGGATAATAAAAGAGTTAAGTGGTGCCCAAGTACTCCTAATTGTGGTAATGCAATAAGAGTAGAGGATGATGAATTCTGTGAGGTAGAATGTTCTTGTGGTATACAGTTTTGTTTTAGCTGCTCATCAGAAGCACATTCACCATGTTCATGTTTGATGTGGGAACTGTGGACAAAGAAATGTCGTGATGAATCTGAAACAGTTAATTGGATTACCGTTCATACAAAGCCTTGCCCGAAATGTCACAAACCCGTGGAGAAGAATGGTGGGTGCAATCTTGTTAGCTGCATTTGCGGTCAAGCATTTTGTTGGCTGTGTGGTGGAGCCACTGGTCGGGACCATACGTGGTCCAGCATTTCTGGTCACAGTTGTGGTCGGTATAAAGAGGAAACAGAAAAAAAAGCACAACAGGCAAAGAGAGATCTGTATCGCTATATGCACTATCATAACCGATACAAAGCACATACTGATTCTTTCAAGTTTGAAATTAAATTGAGGGAGACTATACAACAGAGGATATCAATTTTGGAGGAGAAGGAATTCATGCTTCGGGATTTCACTTGGGTAAATAATGGACTCTACAGACTCTTTCGATCAAGACGAGTCCTCTCATACTCATACCCATTTGCATTTTATATGTTTGGAGATGAGCTTTTCAAGGATGAGATGACAAACGAGGTACGTGAAATCAAACAGAATTTATTTGAGGACCAGCAACAGCAGCTTGAAGCAAATGTTGAGAAGCTCTCCAAGTTTTTGGAAGAGCCCTTTGACCAATATTCCGAAGATCGGGTAATGGAGACAAGGATGCAAGTTATCAATTTGTCAGTAATAACGGATACCCTTTGTAAGAAAATGTATGACTGCATCGAGAATGACTTATTGAGTTCTGTCAACCTTGGTAATCACAATATTGCCCCATACAAGTCAAAAGGAATCGAGAAGGCATTGGCAGCTTTGCAACAACAACAACGATATGAAAGAGAAGCAGCCCTTTCAGAGATCGAGCACAGCCGCAAAATGTTACTAGATAAGCTCAAAGAGTACAAAGGGGAGGATTTGGAAGTTATACAAGAGGCATCTGCTTTTGCTGCTGAGTCAGTGGAGCATAACCATGATCTTATGCTTCCTCCATACGCAATTCGTCCTCCACATTCTGTTAGACTCGAAAATGGCTATTTGACCCGTAAAACTTCACGATATGGGTTAACCTCGAGCTTCCCTTCAAATGAGGCGAAGAAGGAAATCAGTGAGTCATTTACAAATCATAAACAGACCGAATCCAAAAAAGCGAGAAGAGGAGTTGGATTGTTCTTAAGTGCTGCAGCAAAGACTGTGTTTACCATCGTTGGAGTGGTATCAATATTAAGTTTATCTGGTTTAGGACAAGACTTTGCAAAAAGATGTATATCTTTGAAGGTGTTGGACATGTTCAAACAGCTGAAGAAGGAAGAATTGGGCCCAATTTCTCGATGCCCTCCAGGCAAAGTTCTTGTAGTGGCAGACGGGGAAGCTCGGTGCATCGTGAAAGAGAGAATTGAAATTCCATTTTCTTCAGTTGTTGCAAAACCAGATGTGAACTATGGCTGTGGTTGA 2199 41.88 MDDYYISDEDYHDSDQDFEGLENDESDFRSVAAKGSTTKVITKESLLAAQRDDLRRVMDLLSLREHHARTLLIHYRWDVENLFAVLVEKGKSSLFAAAGVRVSEHPNLDASAPTSTLTCGVCMEELASKKATVMDCGHCFCNDCWTEHFIVKINEGQSRRIRCMSYKCNAICDESAVRSLVSQRHPDLADKFDRFLLESYIEDNKRVKWCPSTPNCGNAIRVEDDEFCEVECSCGIQFCFSCSSEAHSPCSCLMWELWTKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGRDHTWSSISGHSCGRYKEETEKKAQQAKRDLYRYMHYHNRYKAHTDSFKFEIKLRETIQQRISILEEKEFMLRDFTWVNNGLYRLFRSRRVLSYSYPFAFYMFGDELFKDEMTNEVREIKQNLFEDQQQQLEANVEKLSKFLEEPFDQYSEDRVMETRMQVINLSVITDTLCKKMYDCIENDLLSSVNLGNHNIAPYKSKGIEKALAALQQQQRYEREAALSEIEHSRKMLLDKLKEYKGEDLEVIQEASAFAAESVEHNHDLMLPPYAIRPPHSVRLENGYLTRKTSRYGLTSSFPSNEAKKEISESFTNHKQTESKKARRGVGLFLSAAAKTVFTIVGVVSILSLSGLGQDFAKRCISLKVLDMFKQLKKEELGPISRCPPGKVLVVADGEARCIVKERIEIPFSSVVAKPDVNYGCG 732
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 14876416 14886262 - Bma007542.1 Bma12g00495 91921

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00495 732 SUPERFAMILY RING/U-box 115 202 - -
Bma12g00495 732 Coils Coil 533 553 - -
Bma12g00495 732 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 3 516 IPR031127 GO:0004842|GO:0016567
Bma12g00495 732 ProSiteProfiles Zinc finger RING-type profile. 119 163 IPR001841 -
Bma12g00495 732 SUPERFAMILY RING/U-box 190 258 - -
Bma12g00495 732 Coils Coil 421 441 - -
Bma12g00495 732 SUPERFAMILY RING/U-box 271 313 - -
Bma12g00495 732 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 205 IPR013083 -
Bma12g00495 732 Gene3D - 248 498 - -
Bma12g00495 732 Pfam IBR domain, a half RING-finger domain 191 252 IPR002867 -
Bma12g00495 732 Pfam Ariadne domain 329 529 IPR045840 -
Bma12g00495 732 SMART ibrneu5 190 252 IPR002867 -
Bma12g00495 732 SMART ibrneu5 260 325 IPR002867 -
Bma12g00495 732 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 3 516 - -
Bma12g00495 732 ProSiteProfiles TRIAD supradomain profile. 115 329 IPR044066 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00495 K11968 ARIH1; ariadne-1 [EC:2.3.2.31] - csv:101205066 900.582
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g00495 Bma-Chr12:14876416 Bma13g01198 Bma-Chr13:45231196 1.92E-13 dispersed
Bma12g00493 Bma-Chr12:14859408 Bma12g00495 Bma-Chr12:14876416 3.71E-99 proximal
Bma02g00592 Bma-Chr2:13457170 Bma12g00495 Bma-Chr12:14876416 1.08E-62 transposed
Bma12g00495 Bma-Chr12:14876416 Bma05g00504 Bma-Chr5:23047089 4.41E-39 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g542 Blo02g00793 Blo15g00712 . Bda08g00903 Bpe07g00413 . . Bma12g00495 Cmo19g00655 Cmo11g01327 . Cma20g00866 . . Sed01g0313 Cpe04g00254 Cpe15g00518 Bhi05g01178 Tan02g0851 Cmetu11g2117 . Hepe02g0547 . . Cla02g00556 Cam02g0582 Cec02g0584 Cco02g0594 Clacu02g0581 Cmu02g0578 Cre02g0908 . . . Cone10ag1147 . . . Cme01g00007 . . . . . . . . Sed05g3633 . Cmo20g00876 Cma11g01782 Cma19g00642 Car11g01069 . . . Bhi10g02039 Tan05g1340 Cmetu11g1828 . . . . . . . . . . . Lsi11g01054 . Chy01g00008 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma12g00495 . 164 517 ARIADNE family AT4G34370 75.7 2.8e-164 575.1
Bma12g00495 . 58 517 ARIADNE family AT2G16090 74.7 1.7e-213 738.8
Bma12g00495 . 25 517 ARIADNE family AT3G27710 61.2 2.5e-178 622.1
Bma12g00495 . 44 517 ARIADNE family AT3G27720 51.0 2.0e-134 476.1
Bma02g00592 . 9 536 ARIADNE family AT1G05890 63.9 3.0e-217 751.5
Bma02g00592 . 18 540 ARIADNE family AT1G65430 78.1 2.4e-251 864.8
Bma02g00592 . 11 455 ARIADNE family AT2G31780 53.1 9.7e-144 506.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003767 0 4 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 5 2 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00495 Bma_Chr12 FPKM 17.958305 21.023623 9.941095 10.454041 12.305771 12.225904 12.031225 5.34112 6.000482 5.237056