Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00496 ATGACATCTTTGGGAATGAAAAACCCTCAGGACATGTGGAGTCTTATTGAAAACTCAAAAATCTTTATTGAGGCTCTTAAACTATTTTTCACAAAGAGGGAGAAGGACATTGGAAACTTGACTTTTGATAAAGATGATCAGCTAGCCGTGGAATTTGTCACTGCTGCTGCAAACATCAGGGCTGCTTCCTTTGGTATTCTGATGCATAGCCTTTTTGAAGCCAAAGGTATTGCTGGTAATATTGTGCATGCAGTTGCAACAACAAATGCTATTATTGCTGGATTGATTGTGATTGAAGCAATCAAGGTGCTGCAAAATGATACAAAGAATTACAGAATGACCTATTGCCTTGAACATCCATCAAGAAAGATGCTAATCATGCCAGTGGAACCATTTGAACCAAACAAATCTTGCTATGTTTGTTCTGAGACACCTCTCTCTCTTGAGGTTAATACTGAACGGACAAAGTTGAGGGATTTGGTTGAAAAGATTGTTAAGTCCAAGCTTGGGATGAACTTTCCACTAATTATGCATGGTTCTTCCCTTCTTTATGAAGTTGGTGACGATCTCGACGACGACATGGTGGCAAATTATGCCACTAACCTCGACAAGGTGTTATCTATGCTGCCTTCTCCAGTTACTAGTGGGACAATACTGACAATCGAAGATCTCCAACAAGAGCTCACTTGTAATATCAATATTAAACACAGAGAGGAATTTGATGAGGAGAAGGAACCTGATGGAATGCTTCTATCTGGATGGGTTCAAGCATCTTCAATGGCTAAGAATGAAGAGAACTCCTTTGCTAATGGCGAAAGCACACTAAATCCGTTAACAACAACTGTGAAGGCAGGCAAGATGGATGGGTCAGAAGTTTCCGCAGCGAAGAAAAGAAAATTATCCGAGAAATCAGAGTCTGTCAGCTCGATAACAGAAACCAAGAACTCTGATAAACTCGAAGTTCTGGACGACGAAGACGACCTTATAATGCTTGATGGTGGGGCTACGTCCACAATCAAGAAGATAAAGTTAAATCATATAGGAGGTTTAATCTAA 1056 40.15 MTSLGMKNPQDMWSLIENSKIFIEALKLFFTKREKDIGNLTFDKDDQLAVEFVTAAANIRAASFGILMHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLQNDTKNYRMTYCLEHPSRKMLIMPVEPFEPNKSCYVCSETPLSLEVNTERTKLRDLVEKIVKSKLGMNFPLIMHGSSLLYEVGDDLDDDMVANYATNLDKVLSMLPSPVTSGTILTIEDLQQELTCNINIKHREEFDEEKEPDGMLLSGWVQASSMAKNEENSFANGESTLNPLTTTVKAGKMDGSEVSAAKKRKLSEKSESVSSITETKNSDKLEVLDDEDDLIMLDGGATSTIKKIKLNHIGGLI 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 14904169 14906252 + Bma007543.1 Bma12g00496 91922

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00496 351 Gene3D Ubiquitin activating enzymes (Uba3). Chain: B, domain 2 1 82 IPR023318 -
Bma12g00496 351 MobiDBLite consensus disorder prediction 289 317 - -
Bma12g00496 351 Pfam Ubiquitin/SUMO-activating enzyme ubiquitin-like domain 148 240 IPR028077 -
Bma12g00496 351 PANTHER SUMO-ACTIVATING ENZYME SUBUNIT 1 264 - -
Bma12g00496 351 SUPERFAMILY Activating enzymes of the ubiquitin-like proteins 25 190 IPR035985 GO:0008641
Bma12g00496 351 Gene3D - 142 332 - -
Bma12g00496 351 MobiDBLite consensus disorder prediction 290 305 - -
Bma12g00496 351 PANTHER UBIQUITIN-ACTIVATING ENZYME E1 1 264 IPR045886 -
Bma12g00496 351 Pfam ThiF family 75 139 IPR000594 -
Bma12g00496 351 Pfam Ubiquitin-activating enzyme, SCCH domain 27 74 IPR019572 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00496 K10685 UBLE1B, SAE2, UBA2; ubiquitin-like 1-activating enzyme E1 B [EC:6.2.1.45] - jre:108986970 494.582
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma05g00435 Bma12g00496 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00435 Bma-Chr5:14516402 Bma12g00496 Bma-Chr12:14904169 0 dispersed
Bma05g00443 Bma-Chr5:14801885 Bma12g00496 Bma-Chr12:14904169 0 dispersed
Bma12g00496 Bma-Chr12:14904169 Bma07g00055 Bma-Chr7:1428050 2.82E-06 dispersed
Bma12g00496 Bma-Chr12:14904169 Bma11g00067 Bma-Chr11:785262 6.13E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g336 Blo02g00838 Blo15g00710 . Bda08g00946 Bpe07g00415 . Bma05g00435 Bma12g00496 . . Cma02g00376 Cma20g00825 Car02g00243 Car20g00711 . . . . . . . . . . . . . . . . . . . . . Lsi10g00399 . Chy11g00352 . . . . . . . . . Sed01g0281 Cmo02g00383 Cmo20g00836 . . . . Cpe16g00263 Cpe05g01278 Bhi10g01969 Tan05g1264 Cmetu11g1045 . Hepe08g0992 . . . . . . . . . . Csa02g01289 . Cme11g00143
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004157 1 1 2 4 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 3 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00496 Bma_Chr12 FPKM 9.983806 9.976747 4.116801 4.473174 12.992345 12.903094 15.550747 9.33811 10.755571 11.155766