Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00503 ATGGGGGGTGATTCACTGGTGGTTTCTAATGGCAATATCAACACACACCCTGATCCTCGCCGTACCTATCAAGTTGTTGTGGCTGCGACACCCAATATGGGCATTGGTAAAAATGGGGTACTGCCTTGGAGGTTGCCTTCTGATCTCAAACTTTTTAAGAACATAACTATGACTACATCAGATACTGGAAAAAGAAATGCAGTTCTAATGGGTCGAAAAACATGGGAGAGTATTCCCATCGATAATCGACCCCTGCCAGGTCGTCTAAATGTTGTCCTGACTCGTTCTGGTAGTTTTGACATTGCAACTGCTGAGAATGTCCTTATTTGTGGTAGCATCGCTTCAGCTCTGGAACTTTTAGCTGCTTCTCCTTATTGTTTGTCAATTGAGAAAGTGTTTGTTATAGGTGGAGGTGAGATATTAAGGGAAGCTCTGAATGCACCAGATTGTGATGCTATCCACATCACTGAAATTGAGACTAACATTGAATGTGATACCTTTATACCAAAGGTTGATATGTCTGTTTTTCAACCATGGTACTCGTCTTTCCCGGTGGTGGAGAATAACATCCGATATTGCTTTACTACTTATGTTCGAGTGAGGAGTTCTGCAGTTGATCCCCTTAGTCAGAACAATGAAATGATCTCTGATAATAGGTTAGATTCTGATAAATTTGAGATAAAGAAGTTCTCTTTCCTGCCAAAGAGCATCTTTGAGAAACACGAGGAGTACTTGTATTTAAGACTTGTCCAAGAAATAATTTCAGATGGCACTCTTAAGGATGATAGAACAGGAACCGGTACATTGTCCACATTTGGTTGTCAGATGCGATTCAACCTGCGCAAAACTTTCCCATTGCTTACAACTAAGAAAGTTTTTTGGCGTGGAGTTGTTGAAGAGCTTTTGTGGTTCATTAGCGGTTCAACAAATGCCAAGGTCCTTCAGGAGAAAGGCATTCACATATGGGATAGTAATGCATCCAGAGACTACCTTGATAGTATTGGTTTGGGAGACAGGGAGGAGGGTGACTTGGGACCTGTATATGGATTTCAGTGGAGACACTTTGGTGCTAGGTACACTGATATGCATGCTAACTATTCTGGTCAAGGATTTGATCAATTACTTGACGTCATCAACAAGGTAAAATATAACCCAGATGACCGCCGAATTGTTCTCTCTGCGTGGAATCCTGGTGATCTTAAATTGATGGCACTTCCACCTTGCCATATGTTTGCACAGTTTTATGTAGCAAACGGGGAGTTGTCTTGTCAAATGTATCAGCGATCTGCTGACATGGGTTTGGGGGTTCCCTTCAACATTGCATCATATTCTCTCCTGACTTGCATGATTGCTCATGTTTGTGATCTTGTACCTGGTGATTTTATTCATGTCATAGGCGATGCTCATGTTTATCGCACGCATGTGAGGCCTCTGCAGGAGCAGCTTCAGAAACTGCCGAAGCCATTCCCAATTCTGAAGATAAATCCTGAGAAAAAGAGCATAGACTCTTTTGTGGCAGCCGATTTCAGTCTCGTTGGTTACGATCCTCACGAGAAGATAAATATGAAAATGGCCGTCTAG 1581 42.25 MGGDSLVVSNGNINTHPDPRRTYQVVVAATPNMGIGKNGVLPWRLPSDLKLFKNITMTTSDTGKRNAVLMGRKTWESIPIDNRPLPGRLNVVLTRSGSFDIATAENVLICGSIASALELLAASPYCLSIEKVFVIGGGEILREALNAPDCDAIHITEIETNIECDTFIPKVDMSVFQPWYSSFPVVENNIRYCFTTYVRVRSSAVDPLSQNNEMISDNRLDSDKFEIKKFSFLPKSIFEKHEEYLYLRLVQEIISDGTLKDDRTGTGTLSTFGCQMRFNLRKTFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKGIHIWDSNASRDYLDSIGLGDREEGDLGPVYGFQWRHFGARYTDMHANYSGQGFDQLLDVINKVKYNPDDRRIVLSAWNPGDLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIASYSLLTCMIAHVCDLVPGDFIHVIGDAHVYRTHVRPLQEQLQKLPKPFPILKINPEKKSIDSFVAADFSLVGYDPHEKINMKMAV 526
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 15828715 15831402 + Bma007564.1 Bma12g00503 91929

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00503 526 CDD DHFR 26 198 IPR001796 GO:0004146|GO:0046654
Bma12g00503 526 ProSitePatterns Dihydrofolate reductase (DHFR) domain signature. 34 56 IPR017925 GO:0004146
Bma12g00503 526 Hamap Thymidylate synthase [thyA]. 243 526 IPR000398 GO:0004799|GO:0006231
Bma12g00503 526 Pfam Thymidylate synthase 246 526 IPR023451 -
Bma12g00503 526 Gene3D Thymidylate synthase/dCMP hydroxymethylase domain 235 526 IPR036926 -
Bma12g00503 526 Pfam Dihydrofolate reductase 24 199 IPR001796 GO:0004146|GO:0046654
Bma12g00503 526 ProSitePatterns Thymidylate synthase active site. 388 416 IPR020940 GO:0004799|GO:0006231
Bma12g00503 526 PRINTS Thymidylate synthase family signature 377 396 IPR000398 GO:0004799|GO:0006231
Bma12g00503 526 PRINTS Thymidylate synthase family signature 284 305 IPR000398 GO:0004799|GO:0006231
Bma12g00503 526 PRINTS Thymidylate synthase family signature 403 418 IPR000398 GO:0004799|GO:0006231
Bma12g00503 526 PRINTS Thymidylate synthase family signature 459 476 IPR000398 GO:0004799|GO:0006231
Bma12g00503 526 PRINTS Thymidylate synthase family signature 421 447 IPR000398 GO:0004799|GO:0006231
Bma12g00503 526 SUPERFAMILY Dihydrofolate reductase-like 18 199 IPR024072 -
Bma12g00503 526 Gene3D Dihydrofolate Reductase, subunit A 5 201 IPR024072 -
Bma12g00503 526 PANTHER THYMIDYLATE SYNTHASE 1 1 526 IPR045097 GO:0016741
Bma12g00503 526 SUPERFAMILY Thymidylate synthase/dCMP hydroxymethylase 223 526 IPR036926 -
Bma12g00503 526 ProSiteProfiles Dihydrofolate reductase (DHFR) domain profile. 22 199 IPR001796 GO:0004146|GO:0046654
Bma12g00503 526 PANTHER BIFUNCTIONAL DIHYDROFOLATE REDUCTASE-THYMIDYLATE SYNTHASE 1 526 - -
Bma12g00503 526 TIGRFAM thym_sym: thymidylate synthase 246 526 IPR000398 GO:0004799|GO:0006231
Bma12g00503 526 PIRSF DHFR-TS 8 526 IPR012262 GO:0004146|GO:0004799|GO:0006730
Bma12g00503 526 CDD TS_Pyrimidine_HMase 246 479 IPR023451 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00503 K13998 DHFR-TS; dihydrofolate reductase / thymidylate synthase [EC:1.5.1.3 2.1.1.45] - twl:120002759 929.472
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00752 Bma-Chr1:6947574 Bma12g00503 Bma-Chr12:15828715 3.72E-49 dispersed
Bma05g00453 Bma-Chr5:15154390 Bma12g00503 Bma-Chr12:15828715 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g353 Blo02g00809 Blo15g00707 . . Bpe07g00421 . . Bma12g00503 . . Cma02g00385 Cma20g00837 Car02g00250 Car20g00724 . . . . . . . . . . . . . . . . . Cone12ag1160 Cone8ag1209 Cone3ag1173 Cone10ag0979 Lsi10g00386 . Chy11g00365 . . . . . . . . . Sed01g0291 Cmo02g00391 Cmo20g00846 . . . . Cpe16g00253 Cpe05g01272 Bhi10g01985 Tan05g1284 Cmetu11g0118 . . . . . . . . . . . . Csa02g01278 . Cme11g00132
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004370 2 2 3 2 2 1 1 1 1 1 1 1 2 1 1 1 1 4 2 1 1 1 1 1 1 1 1 2 1 2 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00503 Bma_Chr12 FPKM 6.850843 6.271654 0.656307 1.167045 0.470761 0.293455 0.139495 0.370471 0.54396 0.32117