Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma12g00507 | ATGAATGATCTTATGACCAAATCATTTCTGAGCTACGTAGAACTAAAGAAACAAGCAATGAAGGATTTGGAAGCTGGGCCAGACATCGAGATGGGGAAGCTTGACCCTGCAGATGAACAAAATCTCTCGCACTTTTTTGAAGAAGTTGCTGCGATCAAAGCAAGCATGGAAGAGATCACTAATCTACTCTTCGACCTTCAAAACCTGAACGAAGAGGCGAAATCCATTTATAATGCCAATGTTCTTAGTGGAGTCCGAGAAAAAATCAACTCGGACATGGTCGAGGTTCTTCGAAAGGCGAAAAATATCAAAACGAAGCTTGGACTTCTGGATCAATCCAATATCGCCAATCGAAAAGTATCAAAATCTTACAAAGAAGGAAGCCCAGTTGATAGAACGAGAATTTCTGTTACGAATGGGCTGAGAATTAAACTGAGAGATATGATGAATAATTTTCAAGCATTGAGAGAGCAGATTCTGAAGGATCACAAAGAGGGTCTAAAGAGGAGGTATTTTGCTGCAACTGGAGAAGAAGCTAGCGAGGAAGCCATAGAAAGGATGATTTCGGTAGGTGGGAAAGAGAAGATCTTTGAAGGAAAGAAAGAGTTGTTAATGGAGAATGAGGAGAGAGAAGAGGCTTTGAAGGAGATACAGAGGAGCTTGAAGGAGCTTCATCAGGTTTTTCTTGATATGGCTGTTCTGGTAGAAACTCAAGGAGAGCATATGAATAATATTGAGCAGAATATTTGTTGGGCTGGAGCTCATATCCAGGATGGAACAAAGGAGCTGTTGAATGCCAAGAAATTGAAGAGCAGAGCTCAATGGACTTACTGGATTGTAGCTCTGGTTTTAATACTGCTGTTCATTTGCCTGATTTCTACCTTGGTTTTCTGA | 894 | 40.83 | MNDLMTKSFLSYVELKKQAMKDLEAGPDIEMGKLDPADEQNLSHFFEEVAAIKASMEEITNLLFDLQNLNEEAKSIYNANVLSGVREKINSDMVEVLRKAKNIKTKLGLLDQSNIANRKVSKSYKEGSPVDRTRISVTNGLRIKLRDMMNNFQALREQILKDHKEGLKRRYFAATGEEASEEAIERMISVGGKEKIFEGKKELLMENEEREEALKEIQRSLKELHQVFLDMAVLVETQGEHMNNIEQNICWAGAHIQDGTKELLNAKKLKSRAQWTYWIVALVLILLFICLISTLVF | 297 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 16198148 | 16199041 | + | Bma007571.1 | Bma12g00507 | 91933 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma12g00507 | 297 | Gene3D | - | 197 | 296 | - | - | |
Bma12g00507 | 297 | Coils | Coil | 52 | 72 | - | - | |
Bma12g00507 | 297 | CDD | SynN | 42 | 192 | IPR006011 | GO:0016020 | |
Bma12g00507 | 297 | CDD | SNARE_syntaxin1-like | 208 | 263 | - | - | |
Bma12g00507 | 297 | PANTHER | SYNTAXIN | 4 | 293 | IPR045242 | - | |
Bma12g00507 | 297 | SMART | SynN_4 | 37 | 164 | IPR006011 | GO:0016020 | |
Bma12g00507 | 297 | SMART | tSNARE_6 | 199 | 266 | IPR000727 | - | |
Bma12g00507 | 297 | ProSitePatterns | Syntaxin / epimorphin family signature. | 210 | 249 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
Bma12g00507 | 297 | SUPERFAMILY | t-snare proteins | 41 | 259 | IPR010989 | GO:0016020|GO:0016192 | |
Bma12g00507 | 297 | PANTHER | SYNTAXIN-112 | 4 | 293 | - | - | |
Bma12g00507 | 297 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 204 | 266 | IPR000727 | - | |
Bma12g00507 | 297 | Gene3D | - | 37 | 167 | - | - | |
Bma12g00507 | 297 | Pfam | Syntaxin | 45 | 239 | IPR006011 | GO:0016020 | |
Bma12g00507 | 297 | Coils | Coil | 200 | 227 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma05g00439 | Bma-Chr5:14599194 | Bma12g00507 | Bma-Chr12:16198148 | 0 | dispersed | |
Bma05g00445 | Bma-Chr5:14925210 | Bma12g00507 | Bma-Chr12:16198148 | 0 | dispersed | |
Bma06g00441 | Bma-Chr6:16972276 | Bma12g00507 | Bma-Chr12:16198148 | 1.34E-12 | dispersed | |
Bma11g00374 | Bma-Chr11:4077034 | Bma12g00507 | Bma-Chr12:16198148 | 7.91E-66 | dispersed | |
Bma12g00507 | Bma-Chr12:16198148 | Bma07g00353 | Bma-Chr7:4463222 | 2.38E-68 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma12g00507 | K08486 | - | csin:114258522 | 413.305 |