Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00507 ATGAATGATCTTATGACCAAATCATTTCTGAGCTACGTAGAACTAAAGAAACAAGCAATGAAGGATTTGGAAGCTGGGCCAGACATCGAGATGGGGAAGCTTGACCCTGCAGATGAACAAAATCTCTCGCACTTTTTTGAAGAAGTTGCTGCGATCAAAGCAAGCATGGAAGAGATCACTAATCTACTCTTCGACCTTCAAAACCTGAACGAAGAGGCGAAATCCATTTATAATGCCAATGTTCTTAGTGGAGTCCGAGAAAAAATCAACTCGGACATGGTCGAGGTTCTTCGAAAGGCGAAAAATATCAAAACGAAGCTTGGACTTCTGGATCAATCCAATATCGCCAATCGAAAAGTATCAAAATCTTACAAAGAAGGAAGCCCAGTTGATAGAACGAGAATTTCTGTTACGAATGGGCTGAGAATTAAACTGAGAGATATGATGAATAATTTTCAAGCATTGAGAGAGCAGATTCTGAAGGATCACAAAGAGGGTCTAAAGAGGAGGTATTTTGCTGCAACTGGAGAAGAAGCTAGCGAGGAAGCCATAGAAAGGATGATTTCGGTAGGTGGGAAAGAGAAGATCTTTGAAGGAAAGAAAGAGTTGTTAATGGAGAATGAGGAGAGAGAAGAGGCTTTGAAGGAGATACAGAGGAGCTTGAAGGAGCTTCATCAGGTTTTTCTTGATATGGCTGTTCTGGTAGAAACTCAAGGAGAGCATATGAATAATATTGAGCAGAATATTTGTTGGGCTGGAGCTCATATCCAGGATGGAACAAAGGAGCTGTTGAATGCCAAGAAATTGAAGAGCAGAGCTCAATGGACTTACTGGATTGTAGCTCTGGTTTTAATACTGCTGTTCATTTGCCTGATTTCTACCTTGGTTTTCTGA 894 40.83 MNDLMTKSFLSYVELKKQAMKDLEAGPDIEMGKLDPADEQNLSHFFEEVAAIKASMEEITNLLFDLQNLNEEAKSIYNANVLSGVREKINSDMVEVLRKAKNIKTKLGLLDQSNIANRKVSKSYKEGSPVDRTRISVTNGLRIKLRDMMNNFQALREQILKDHKEGLKRRYFAATGEEASEEAIERMISVGGKEKIFEGKKELLMENEEREEALKEIQRSLKELHQVFLDMAVLVETQGEHMNNIEQNICWAGAHIQDGTKELLNAKKLKSRAQWTYWIVALVLILLFICLISTLVF 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 16198148 16199041 + Bma007571.1 Bma12g00507 91933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00507 297 Gene3D - 197 296 - -
Bma12g00507 297 Coils Coil 52 72 - -
Bma12g00507 297 CDD SynN 42 192 IPR006011 GO:0016020
Bma12g00507 297 CDD SNARE_syntaxin1-like 208 263 - -
Bma12g00507 297 PANTHER SYNTAXIN 4 293 IPR045242 -
Bma12g00507 297 SMART SynN_4 37 164 IPR006011 GO:0016020
Bma12g00507 297 SMART tSNARE_6 199 266 IPR000727 -
Bma12g00507 297 ProSitePatterns Syntaxin / epimorphin family signature. 210 249 IPR006012 GO:0005484|GO:0006886|GO:0016020
Bma12g00507 297 SUPERFAMILY t-snare proteins 41 259 IPR010989 GO:0016020|GO:0016192
Bma12g00507 297 PANTHER SYNTAXIN-112 4 293 - -
Bma12g00507 297 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 204 266 IPR000727 -
Bma12g00507 297 Gene3D - 37 167 - -
Bma12g00507 297 Pfam Syntaxin 45 239 IPR006011 GO:0016020
Bma12g00507 297 Coils Coil 200 227 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00439 Bma-Chr5:14599194 Bma12g00507 Bma-Chr12:16198148 0 dispersed
Bma05g00445 Bma-Chr5:14925210 Bma12g00507 Bma-Chr12:16198148 0 dispersed
Bma06g00441 Bma-Chr6:16972276 Bma12g00507 Bma-Chr12:16198148 1.34E-12 dispersed
Bma11g00374 Bma-Chr11:4077034 Bma12g00507 Bma-Chr12:16198148 7.91E-66 dispersed
Bma12g00507 Bma-Chr12:16198148 Bma07g00353 Bma-Chr7:4463222 2.38E-68 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00507 K08486 - csin:114258522 413.305