Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00509 ATGCAAAACACCATGGTGATAGACAGCAAAGAGAAGAAGATCAAAGTAAGCATAGAAGAAACAGAATCAAAGATGACAGACCAAAACAGCACTAAAACCGACAACCACAGAGAAACCTCAGCCGACACAGCCAAAGAAAACAACTCAAAAGCTTCCGACTTTCAAAAGCCAGATTACATCCACGTTCGAGCACGTCGCGGCCAGGCGACAGACAGCCATAGCCTAGCCGAAAGAGTGAGGAGAGAGAAGATTAGTGAGAGAATGAGATATTTGCAGGATTTAGTCCCAGGATGCAACAAAATCACAGGCAAAGCTGGAATGCTAGACGAAATCATCAACTACGTTCAATCGCTTCAATGCCAAGTAGAGTTTCTATCGATGAAATTAGCCACCTTAAACCCCAGGCTAGAACCCATAGTTGATGGAATCTTCGCAAAAGAGGCTTTTCCTTCTTGCACGTCAAATTTTCCAAATGTGGGAATTTCATCAGAAGCCAACAATTCAGCTTACACCCACCAGTTTAATCCATTACAGCAAATGCTTTCTTCATCTGGTTCGGAAATGGAAAGAAGCCCCTCGGATGTCGGCCTACGTCGAACCATTAGCACACCCGTTTCGTTCATCCCGGAAACATTTGTTAGCTCTTCCTGCTTCACACAAAACCAGCCTCCTTCAGCTTTTGAAGCTGATTTACAAAATTTTTACAACGTCTCGTTTGATATAGGAAGATCAACAGATTTTTCATCTCACTCGTATACAGGTAGATAA 768 42.97 MQNTMVIDSKEKKIKVSIEETESKMTDQNSTKTDNHRETSADTAKENNSKASDFQKPDYIHVRARRGQATDSHSLAERVRREKISERMRYLQDLVPGCNKITGKAGMLDEIINYVQSLQCQVEFLSMKLATLNPRLEPIVDGIFAKEAFPSCTSNFPNVGISSEANNSAYTHQFNPLQQMLSSSGSEMERSPSDVGLRRTISTPVSFIPETFVSSSCFTQNQPPSAFEADLQNFYNVSFDIGRSTDFSSHSYTGR 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 16505688 16506706 - Bma007583.1 Bma12g00509 91935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00509 255 CDD bHLH_AtBPE_like 58 143 - -
Bma12g00509 255 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 68 118 IPR011598 GO:0046983
Bma12g00509 255 Gene3D - 65 139 IPR036638 GO:0046983
Bma12g00509 255 MobiDBLite consensus disorder prediction 1 58 - -
Bma12g00509 255 Pfam Helix-loop-helix DNA-binding domain 72 119 IPR011598 GO:0046983
Bma12g00509 255 MobiDBLite consensus disorder prediction 8 58 - -
Bma12g00509 255 PANTHER TRANSCRIPTION FACTOR BHLH63-LIKE 8 243 - -
Bma12g00509 255 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 66 137 IPR036638 GO:0046983
Bma12g00509 255 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 8 243 IPR024097 GO:0006355
Bma12g00509 255 SMART finulus 74 124 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma05g00457 Bma12g00509 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00457 Bma-Chr5:15581208 Bma12g00509 Bma-Chr12:16505688 6.57E-130 dispersed
Bma08g00792 Bma-Chr8:45414433 Bma12g00509 Bma-Chr12:16505688 1.27E-84 dispersed
Bma09g00586 Bma-Chr9:42986767 Bma12g00509 Bma-Chr12:16505688 1.62E-48 dispersed
Bma12g00509 Bma-Chr12:16505688 Bma15g00648 Bma-Chr15:9352134 6.18E-46 dispersed
Bma12g00509 Bma-Chr12:16505688 Bma03g00554 Bma-Chr3:4562973 2.07E-91 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58109 PF00010 HLH 3.10E-06 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00509 - - pper:18766580 321.627