Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00515 ATGGTGAACGTTCTAGCAATGCACGGTCAAGTAATTCACGGAATAATGAAACTAGTAGGGATGAGATCCCAGAAAGTCGAAATAGAGCCGGGGACGGTCATCAACTTCTGGCTTCCAAATGAGAATCAAAACAAGAAGAAAGAAAAACCTGCTGTAGTTTTCCTCCATGGATTCACAGGCAATGGAATCCTAACATGGCAATTCCAAGTTCTCTCCCTCGCCAAATCCTACAAAATCTACGTCCCTGATCTCCTCTTCTTCGGCGCTTCCATTACCGACAGACCAGAGCGGTCGCCGGATTTTCAAGCTGAGTGTGTGGTGAAGGGTATGAAGATGCTCGGAGTAGAAAGGTGGACCGTGGTTGGGTTCAGCTATGGAGGAATAATCGGGTTCAAAATGGCTGAGCTGTATCCGAATCTGGTCGAGTCCATGGTGATCACCGGTTCTAACACTCGCGTGTCCGAGACCATAAGCGAAGCAGCTCTACAGAGAATCGGTTTTAAAGCTTGGTCCGATTTTTTGGTTTGTGACTCGGCAGATGCTGTCGAAATTCTCTTAAAAATCGGCTCTTACAAAGCGCCTTGGGTGCCTCGTCGTTTTTACGAAGACTATTTCAAGGTAATGTTTGAACACAGAAAGCAAAGAGAAGAACTACTTGAAGGTTTACTCGCTGGTGGTCATGACGACACGGTTTTGAAATATCGACAGAAAATACATCTTTTATGGGGCAAGGAAGACATTATCTTCAACGTTGAAGTTGCTGAAAATCTGAAAAAGTAA 780 44.87 MVNVLAMHGQVIHGIMKLVGMRSQKVEIEPGTVINFWLPNENQNKKKEKPAVVFLHGFTGNGILTWQFQVLSLAKSYKIYVPDLLFFGASITDRPERSPDFQAECVVKGMKMLGVERWTVVGFSYGGIIGFKMAELYPNLVESMVITGSNTRVSETISEAALQRIGFKAWSDFLVCDSADAVEILLKIGSYKAPWVPRRFYEDYFKVMFEHRKQREELLEGLLAGGHDDTVLKYRQKIHLLWGKEDIIFNVEVAENLKK 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 17342884 17345294 - Bma007600.1 Bma12g00515 91941

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00515 259 PANTHER EPOXIDE HYDROLASE 4-LIKE 2 259 - -
Bma12g00515 259 Pfam alpha/beta hydrolase fold 50 173 IPR000073 -
Bma12g00515 259 PRINTS Alpha/beta hydrolase fold signature 134 147 IPR000073 -
Bma12g00515 259 PRINTS Alpha/beta hydrolase fold signature 76 91 IPR000073 -
Bma12g00515 259 PRINTS Alpha/beta hydrolase fold signature 238 252 IPR000073 -
Bma12g00515 259 PRINTS Alpha/beta hydrolase fold signature 120 133 IPR000073 -
Bma12g00515 259 SUPERFAMILY alpha/beta-Hydrolases 18 258 IPR029058 -
Bma12g00515 259 Gene3D alpha/beta hydrolase 8 259 IPR029058 -
Bma12g00515 259 PANTHER SI:DKEY-122A22.2 2 259 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00515 - - - qsu:111999397 317.39
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00142 Bma-Chr2:1256767 Bma12g00515 Bma-Chr12:17342884 9.18E-34 dispersed
Bma03g00989 Bma-Chr3:10649011 Bma12g00515 Bma-Chr12:17342884 3.36E-93 dispersed
Bma12g00515 Bma-Chr12:17342884 Bma15g01050 Bma-Chr15:42209579 6.53E-35 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g601 . . Bda06g00935 . . . . Bma12g00515 . . . . Car02g00258 . . . . . . . . . . . . . . . . . . . . . Cone10ag0964 Lsi10g00369 . . . . . . . . . . . Sed05g3619 Cmo02g00401 . . . . . . Cpe05g01261 Bhi10g02010 Tan05g1308 Cmetu07g0234 . Hepe08g1015 . . . . . . . . . . Csa02g01258 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002258 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 2 1 2 2 3 2 2 2 5 2 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00515 Bma_Chr12 FPKM 0.234973 0.0 0.0 0.163527 1.585544 2.727896 1.743714 0.0 0.0 0.0