Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00524 ATGGCTGACCGGAAGGATGACAAGGATAACGATGCTTCCTTCATAGGCCAGAAATCTTTTTCGGATTTTGATCCTGGAAAGAAACCAAAGAGAAACAAGTTTGCTTTGGCCTGTGCATTGATGGCTTCCATGACGTCGATTCTTCTGGGTTATGACATTGGTGTGATGAGTGGAGCAGCAATCTACATCAAGGACGACTTCAAAATTACAGACACGCAGGTCGAAATCCTCGCCGGTATACTTAACCTTTACTCGCTAATAGGCTCGTTCGCAGCCGGCAGAACCTCCGACTGGATTGGCCGCCGATACACTATGGTAGTTGCTGGCGCCCTATTCTTCGCCGGAGCGATTCTCATGGGTTTCTCAACTAACTATGCCTTCCTCATGTTCGCTCGTTTCGTCGCCGGTATCGGCGTCGGATATGCCCTTATGATTGCTCCTGTCTACACCGCCGAGATTTCTCCGGCTTCTAATCGCGGCTACCTCACCTCATTCACCGAGGTATTCATCAATGGCGGAATATTACTTGGATATGTATCCAACTATGCCTTTTCAAAACTTCCGACAAACTTGGGGTGGAGGTTTATGCTCGGAATAGGTGCCATTCCATCAGTTTTCCTAGCTGTCGTGGTTATAACTATGCCGGAATCTCCACGATGGTTGGTAATGCAAGGTCGACTTGGAGAAGCAAAGAGAGTCCTCAATAAAACTTCCACCTCCGTTGAAGAAGCTGAGCTTAGACTCTCCGATATAAAGCAAGTGGTCGGCATTCCGGACAGCTGCACAGACGACGTCGTTGGAGTCACCAAACGTAGCCACGGCGAAGGTGTTTGGAAAGAATTGCTCCTCCGTCCTACACCGACCGTTCGCCATATTTTAATCTCAGCCGCTGGCATACACTTCTTCCAACAAGCTTCCGGCATAGACGCCGTCGTTCTATACAGCCCGAGAATCTTCAAGGGGGCAGGGATCACATCCTACAACGAGGTATTACTCGCTACGATAGCCGTTGGATTCGTGAAGACGATGTTCATTTTAGTGGCGACCTTTTTACTTGATCGAATCGGACGGCGTCCGTTGCTCCTCAGTAGCGTCGCGGGCATGATCATTGCACTCGCAACCCTCGGATTGGCCCTCACGGTCATCGATCACTCGGAGGAGAAGCTAAAATGGGCCGTAGTCCTCTGCATGAGCATGGTATTATCCTACGTCGCGGCCTTCTCGATCGGGATGGGGCCAGTCACGTGGGTCTACAGCTCGGAGATATTCCCACTGAGGCTGCGGGCCCAGGGTATGAGCGTGGCTGTGGCTGTGAGTAGGCTCACAAGTGGGACCCTCGGAATGACCTTCATATCTCTCTATAAGGCCATCACCATTGGAGGAGCCTTCTTTCTTTTCGCTGGAGTCGCATCAGTGGCCTGGCTGTTTTTCTATATAGTACTACCGGAAACACGGAATAAAACCCTGGAGGAGATCGATGGGCTTTTTGGTAATTACCAATGGAAAAAGATCAAGACAGATAACGACCACACACAGTTAGGAACTACTGGGCAAGAACAAGTTAGTGGCAATTAA 1575 49.9 MADRKDDKDNDASFIGQKSFSDFDPGKKPKRNKFALACALMASMTSILLGYDIGVMSGAAIYIKDDFKITDTQVEILAGILNLYSLIGSFAAGRTSDWIGRRYTMVVAGALFFAGAILMGFSTNYAFLMFARFVAGIGVGYALMIAPVYTAEISPASNRGYLTSFTEVFINGGILLGYVSNYAFSKLPTNLGWRFMLGIGAIPSVFLAVVVITMPESPRWLVMQGRLGEAKRVLNKTSTSVEEAELRLSDIKQVVGIPDSCTDDVVGVTKRSHGEGVWKELLLRPTPTVRHILISAAGIHFFQQASGIDAVVLYSPRIFKGAGITSYNEVLLATIAVGFVKTMFILVATFLLDRIGRRPLLLSSVAGMIIALATLGLALTVIDHSEEKLKWAVVLCMSMVLSYVAAFSIGMGPVTWVYSSEIFPLRLRAQGMSVAVAVSRLTSGTLGMTFISLYKAITIGGAFFLFAGVASVAWLFFYIVLPETRNKTLEEIDGLFGNYQWKKIKTDNDHTQLGTTGQEQVSGN 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 18911743 18913534 - Bma007629.1 Bma12g00524 91950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00524 524 ProSitePatterns Sugar transport proteins signature 1. 92 109 IPR005829 GO:0016021|GO:0022857|GO:0055085
Bma12g00524 524 Pfam Sugar (and other) transporter 38 496 IPR005828 GO:0016021|GO:0022857|GO:0055085
Bma12g00524 524 ProSiteProfiles Major facilitator superfamily (MFS) profile. 38 485 IPR020846 GO:0022857
Bma12g00524 524 Gene3D MFS general substrate transporter like domains 28 499 IPR036259 -
Bma12g00524 524 SUPERFAMILY MFS general substrate transporter 24 493 IPR036259 -
Bma12g00524 524 CDD MFS_PLT 41 492 IPR044776 GO:0005351
Bma12g00524 524 ProSitePatterns Sugar transport proteins signature 2. 134 159 IPR005829 GO:0016021|GO:0022857|GO:0055085
Bma12g00524 524 PRINTS Sugar transporter signature 129 148 IPR003663 GO:0016020|GO:0022857|GO:0055085
Bma12g00524 524 PRINTS Sugar transporter signature 46 56 IPR003663 GO:0016020|GO:0022857|GO:0055085
Bma12g00524 524 PRINTS Sugar transporter signature 303 313 IPR003663 GO:0016020|GO:0022857|GO:0055085
Bma12g00524 524 PRINTS Sugar transporter signature 420 432 IPR003663 GO:0016020|GO:0022857|GO:0055085
Bma12g00524 524 PRINTS Sugar transporter signature 397 418 IPR003663 GO:0016020|GO:0022857|GO:0055085
Bma12g00524 524 PANTHER SOLUTE CARRIER FAMILY 2, FACILITATED GLUCOSE TRANSPORTER 21 509 IPR045262 GO:0015144
Bma12g00524 524 PANTHER SUGAR TRANSPORTER 21 509 - -
Bma12g00524 524 TIGRFAM SP: MFS transporter, sugar porter (SP) family 3 492 IPR003663 GO:0016020|GO:0022857|GO:0055085
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma08g00575 Bma12g00524 CCT
Bma08g00575 Bma12g00524 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00551 Bma-Chr5:30151274 Bma12g00524 Bma-Chr12:18911743 1.03E-145 dispersed
Bma06g01420 Bma-Chr6:50942475 Bma12g00524 Bma-Chr12:18911743 1.77E-73 dispersed
Bma10g00687 Bma-Chr10:10421702 Bma12g00524 Bma-Chr12:18911743 9.60E-21 dispersed
Bma11g00516 Bma-Chr11:6474247 Bma12g00524 Bma-Chr12:18911743 5.42E-179 dispersed
Bma12g00524 Bma-Chr12:18911743 Bma02g00145 Bma-Chr2:1271131 5.40E-58 dispersed
Bma12g00524 Bma-Chr12:18911743 Bma06g00793 Bma-Chr6:40649356 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00524 - - tcc:18608151 780.015