Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00525 ATGTCTTCCCAAACTTCTGAAACAACTCAGATTGGAAATGTGAAAAGTGTTGATGGGTTAAGTGTTGTATCTGAACGGGAAGAATGTGATTTCTCAAGGTTATTGGAGAGGCCAAGGGCATTAAATATGGAGAGAAAGCGATCGTTTGACGAGCGATCAATGACTGAGTTGCCAATTGGTTACTCCCCTCGTTACTTGTCTAGAAATCCTGATATTGCTTTTCGAGTTTGTGATAATCTTGATTCTCTCTATTCGTCTTCTCCCTCTAGAAGGTCGGGATATAATACTCCAAAGTCACAGAATGTGTGTGAGCCTAATCCTATGGTGTCTGAAGCTTGGGAAGCTCTGAGGAGATCTCTGGTGTATTTTCGTGGCCAACCAGTTGGAACTATTGCGGCATTGGACAGCTCTGAAGAAAACCTTAACTACGATCAGGTGTTTGTGAGAGACTTTGTTCCAAGTGGATTTGCGTTTCTTATGAACGGGCAACCCGAAATAGTGAAAAACTTTATCCTAAAGACACTTCGCCTTCAATCATGGGAGAAAAAGATTGATAGATTTCAGCTTGGAGAAGGAGTGATGCCTGCTAGTTTCAAGGTATTTCACGATCCAGTGAGGAATTACGAGACCTTGATTGCTGATTTCGGAGAGAGCGCAATAGGAAGAGTTGCCCCTGTTGATTCTGGGTTTTGGTGGATTATATTACTTCGAGCCTATACGAAGTCCACAGGTGACACTTCATTGGCTGAACTGCCCGACTGCCAGAAAGGTATGCGGCTGATACTGAGTTTATGTCTTTCTGAGGGGTTCGACACCTTCCCAACGCTTCTCTGTGCCGATGGTTGTTGTATGATTGATCGCAGAATGGGAGTTTATGGTTATCCAATCGAAATTCAGGCGCTTTTCTTCATGGCCTTGAGATGTGCATTGCTTCTTCTGAAACAAGACGCTCAAGGGAAGGAGTTTGTAGAGAGAATAGTGAAACGCCTTCATGCTTTGAGCTATCATATGCGGAGTTATTTCTGGATAGACATGAAACATCTTAATGATATTTATCGCTACAAAACCGAAGAGTATTCTCACTCTGCAGTTAACAAGTTCAACGTAATTCCCGACTCTCTACCTGAATGGATTTTTGACTTTATGCCGACTCGTGGTGGCTACTTTATCGGAAATGTTAGTCCGGCAAGAATGGACTTTAGATGGTTTTGCTTGGGTAATTGCATTGCAATTCTATCGTCCTTAGCGACTCCCGATCAAGCCACTGCAATTATGGATCTGATTGAATCACGATGGGAAGAGTTGGTAGGAGAAATGCCACTAAAAGTTTGTTATCCAGCCATTGAAAGCCATGAGTGGGGGATAGTTACGGGATGTGATCCGAAGAATACTAGGTGGAGCTATCATAATGGAGGTTCTTGGCCAGTGCTCTTATGGCTTCTCACGGCAGCATGCATCAAGACTGGACGCCCTCAAATTGCAAGACTAGCATTGGAACTTGCCGAAAGTAGGCTGATCAGAGATAGTTGGCCGGAATATTATGATGGAAAGCACGGCCGGTATATTGGAAAGCAAGCCCGTAAGTTCCAGACATGGTCTGTTGCTGGTTATTTGGTGGCAAAGATGATGTTGGAAGATCCTTCGCATTTGGGTATGGTGTCTATTGAAGAAGACAAGCACATGAAACCTGTGCTAAGAAGATCAAATTCCTGGGCCTTTTAA 1722 43.61 MSSQTSETTQIGNVKSVDGLSVVSEREECDFSRLLERPRALNMERKRSFDERSMTELPIGYSPRYLSRNPDIAFRVCDNLDSLYSSSPSRRSGYNTPKSQNVCEPNPMVSEAWEALRRSLVYFRGQPVGTIAALDSSEENLNYDQVFVRDFVPSGFAFLMNGQPEIVKNFILKTLRLQSWEKKIDRFQLGEGVMPASFKVFHDPVRNYETLIADFGESAIGRVAPVDSGFWWIILLRAYTKSTGDTSLAELPDCQKGMRLILSLCLSEGFDTFPTLLCADGCCMIDRRMGVYGYPIEIQALFFMALRCALLLLKQDAQGKEFVERIVKRLHALSYHMRSYFWIDMKHLNDIYRYKTEEYSHSAVNKFNVIPDSLPEWIFDFMPTRGGYFIGNVSPARMDFRWFCLGNCIAILSSLATPDQATAIMDLIESRWEELVGEMPLKVCYPAIESHEWGIVTGCDPKNTRWSYHNGGSWPVLLWLLTAACIKTGRPQIARLALELAESRLIRDSWPEYYDGKHGRYIGKQARKFQTWSVAGYLVAKMMLEDPSHLGMVSIEEDKHMKPVLRRSNSWAF 573
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 19099719 19101966 - Bma007631.1 Bma12g00525 91951

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00525 573 Pfam Alkaline and neutral invertase 112 547 IPR024746 GO:0033926
Bma12g00525 573 Gene3D - 137 543 IPR012341 GO:0005975
Bma12g00525 573 PANTHER - 1 572 IPR024746 GO:0033926
Bma12g00525 573 SUPERFAMILY Six-hairpin glycosidases 108 540 IPR008928 GO:0005975
Bma12g00525 573 PANTHER ALKALINE/NEUTRAL INVERTASE B-RELATED 1 572 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00525 - - - twl:120001631 997.653
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02066 Bma-Chr1:76139170 Bma12g00525 Bma-Chr12:19099719 0 dispersed
Bma06g01151 Bma-Chr6:48423037 Bma12g00525 Bma-Chr12:19099719 0 dispersed
Bma12g00525 Bma-Chr12:19099719 Bma14g01372 Bma-Chr14:25493196 0 dispersed
Bma12g00525 Bma-Chr12:19099719 Bma08g01209 Bma-Chr8:51081465 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g97 . . Bda06g00969 . . . . Bma12g00525 . Cmo11g01723 . . . . . Cpe04g00574 . Bhi05g01747 . . . . . . Cla02g00449 Cam02g0456 Cec02g0455 Cco02g0474 Clacu02g0457 Cmu02g0452 Cre02g0786 Cone12ag1209 Cone8ag1261 . . . Csa07g00078 . Cme01g01286 . . . . . . . . . . . Cma11g01397 . . . . . . . . . . . . . . . . . . . Lsi11g01179 . Chy01g00699 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001478 3 3 4 3 4 1 3 1 1 1 1 1 3 2 2 3 1 6 3 2 2 2 2 2 2 2 2 4 2 5 73
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00525 Bma_Chr12 FPKM 6.815642 7.990282 8.572745 8.20817 12.303201 8.917724 9.695627 14.335917 13.920774 15.644636