Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00538 ATGTCTTCCACCTTCAGCGGCGATGAAACTGCTCCCTTTTTCGGCTTCCTTGGCGCCGCTGCTGCTCTTGTCTTCTCCTGTATGGGAGCTGCGTATGGTACCGCAAAGAGTGGTGTTGGTGTGGCTTCAATGGGGGTAATGAGGCCCGAGCTGGTTATGAAATCTATTGTTCCAGTAGTTATGGCTGGAGTTTTGGGGATATATGGTTTGATTATTGCTGTGATTATCAGCACTGGGATCAATCCCAAGGCCAAATCGTATTACCTATTTGATGGTTATGCACATTTGTCATCTGGACTTGCTTGTGGCCTGGCTGGGCTGTCAGCAGGAATGGCAATTGGTATTGTTGGCGATGCTGGTGTCCGAGCCAACGCACAACAGCCGAAACTTTTTGTTGGGATGATTTTGATTCTCATCTTTGCTGAGGCGCTGGCACTCTATGGCCTCATTGTTGGCATCATCTTGTCTTCACGAGCTGGCCAGTCCAGAGCAGAGTAG 498 49.4 MSSTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 165
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
12 21225905 21228128 - Bma007661.1 Bma12g00538 91964

Annotation


Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00538 165 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 3 165 - -
Bma12g00538 165 SUPERFAMILY F1F0 ATP synthase subunit C 13 77 IPR035921 -
Bma12g00538 165 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 3 165 - -
Bma12g00538 165 SUPERFAMILY F1F0 ATP synthase subunit C 87 156 IPR035921 -
Bma12g00538 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 30 54 IPR000245 GO:0033179|GO:0046961|GO:1902600
Bma12g00538 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 56 80 IPR000245 GO:0033179|GO:0046961|GO:1902600
Bma12g00538 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 107 133 IPR000245 GO:0033179|GO:0046961|GO:1902600
Bma12g00538 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 134 157 IPR000245 GO:0033179|GO:0046961|GO:1902600
Bma12g00538 165 TIGRFAM V_ATP_synt_C: V-type ATPase, C subunit 13 121 IPR011555 GO:0033179|GO:0046961|GO:1902600
Bma12g00538 165 CDD ATP-synt_Vo_c_ATP6C_rpt2 89 156 - -
Bma12g00538 165 CDD ATP-synt_Vo_c_ATP6C_rpt1 13 80 - -
Bma12g00538 165 Gene3D - 11 162 IPR035921 -
Bma12g00538 165 Pfam ATP synthase subunit C 97 155 IPR002379 GO:0015078|GO:0033177|GO:1902600
Bma12g00538 165 Pfam ATP synthase subunit C 17 76 IPR002379 GO:0015078|GO:0033177|GO:1902600
       

Pathway


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00538 K02155 ATPeV0C, ATP6L; V-type H+-transporting ATPase 16kDa proteolipid subunit - cit:102607521 288.5
       

Dupl-types


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00418 Bma-Chr5:13219011 Bma12g00538 Bma-Chr12:21225905 1.70E-113 dispersed
Bma12g00538 Bma-Chr12:21225905 Bma05g00155 Bma-Chr5:4567325 4.57E-113 transposed
Bma12g00538 Bma-Chr12:21225905 Bma01g00735 Bma-Chr1:6732366 3.56E-113 transposed
       

Syn-Families


Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma05g00029 . 1 995 Primary Pumps ATPases(2) AT1G10130 81.7 0.0e+00 1613.6
Bma07g00127 . 1 794 Primary Pumps ATPases(2) AT2G28520 77.0 0.0e+00 1250.0
Bma05g00148 . 1 805 Primary Pumps ATPases(2) AT2G28520 58.7 1.2e-277 952.6
Bma08g00785 BCT 10 730 Primary Pumps ATPases(2) AT2G28520 57.8 1.5e-254 875.9
Bma05g00148 . 1 809 Primary Pumps ATPases(2) AT2G21410 67.5 0.0e+00 1106.3
Bma08g00785 BCT 6 735 Primary Pumps ATPases(2) AT2G21410 69.9 0.0e+00 1095.1
Bma07g00127 . 9 799 Primary Pumps ATPases(2) AT2G21410 59.4 1.7e-282 968.8
Bma03g00566 BCT 717 1334 Primary Pumps ATPases(2) AT2G21410 60.2 4.3e-246 847.8
Bma05g00148 . 1 809 Primary Pumps ATPases(2) AT4G39080 68.9 0.0e+00 1119.4
Bma08g00785 BCT 8 735 Primary Pumps ATPases(2) AT4G39080 70.5 0.0e+00 1095.1
Bma07g00127 . 9 799 Primary Pumps ATPases(2) AT4G39080 59.9 6.0e-280 960.3
Bma03g00566 BCT 717 1334 Primary Pumps ATPases(2) AT4G39080 61.2 1.6e-248 855.9
Bma01g00735 BCT 29 166 Primary Pumps ATPases(2) AT4G34720 100.0 5.7e-61 230.3
Bma12g00538 . 28 165 Primary Pumps ATPases(2) AT4G34720 100.0 5.7e-61 230.3
Bma05g00155 BCT 28 165 Primary Pumps ATPases(2) AT4G34720 100.0 5.7e-61 230.3
Bma05g00418 . 28 165 Primary Pumps ATPases(2) AT4G34720 100.0 5.7e-61 230.3
Bma12g00538 . 2 165 Primary Pumps ATPases(2) AT1G75630 81.3 5.7e-67 250.8
Bma05g00418 . 2 165 Primary Pumps ATPases(2) AT1G75630 81.3 5.7e-67 250.8
Bma01g00735 BCT 3 166 Primary Pumps ATPases(2) AT1G75630 80.8 7.4e-67 250.4
Bma05g00155 BCT 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 7.4e-67 250.4
Bma12g00538 . 3 165 Primary Pumps ATPases(2) AT2G16510 100.0 1.8e-74 275.4
Bma05g00418 . 3 165 Primary Pumps ATPases(2) AT2G16510 100.0 1.8e-74 275.4
Bma01g00735 BCT 4 166 Primary Pumps ATPases(2) AT2G16510 99.4 2.3e-74 275.0
Bma05g00155 BCT 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 2.3e-74 275.0
Bma12g00538 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.1e-52 202.6
Bma05g00418 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.1e-52 202.6
Bma01g00735 BCT 2 123 Primary Pumps ATPases(2) AT1G19910 97.5 1.4e-52 202.2
Bma05g00155 BCT 1 122 Primary Pumps ATPases(2) AT1G19910 97.5 1.4e-52 202.2
Bma04g00059 BCT 1 180 Primary Pumps ATPases(2) AT2G25610 86.7 4.3e-71 264.6
Bma01g02155 BCT 1 180 Primary Pumps ATPases(2) AT2G25610 86.7 4.0e-69 258.1
Bma01g02159 . 1 180 Primary Pumps ATPases(2) AT2G25610 86.7 4.0e-69 258.1
Bma01g00735 BCT 29 166 Primary Pumps ATPases(2) AT4G38920 100.0 1.6e-60 228.8
Bma12g00538 . 28 165 Primary Pumps ATPases(2) AT4G38920 100.0 1.6e-60 228.8
Bma05g00155 BCT 28 165 Primary Pumps ATPases(2) AT4G38920 100.0 1.6e-60 228.8
Bma05g00418 . 28 165 Primary Pumps ATPases(2) AT4G38920 100.0 1.6e-60 228.8
Bma04g00059 BCT 1 180 Primary Pumps ATPases(2) AT4G32530 70.0 1.4e-68 256.1
Bma01g02155 BCT 1 180 Primary Pumps ATPases(2) AT4G32530 69.0 5.1e-66 247.7
Bma01g02159 . 1 180 Primary Pumps ATPases(2) AT4G32530 69.0 5.1e-66 247.7
Bma07g00120 BCT 1 1065 Primary Pumps ATPases(2) AT1G07810 81.3 0.0e+00 1696.4
Bma11g00140 BCT 826 1543 Primary Pumps ATPases(2) AT1G07810 78.6 0.0e+00 1093.6
Bma08g00475 . 561 888 Primary Pumps ATPases(2) AT1G07810 77.8 2.0e-142 503.8
Bma07g00120 BCT 1 1065 Primary Pumps ATPases(2) AT1G07670 80.8 0.0e+00 1693.7
Bma11g00140 BCT 826 1543 Primary Pumps ATPases(2) AT1G07670 77.7 0.0e+00 1088.9
Bma08g00475 . 561 888 Primary Pumps ATPases(2) AT1G07670 77.2 2.2e-141 500.4
Bma05g00029 . 1 995 Primary Pumps ATPases(2) AT1G10130 81.7 0.0e+00 1613.6
Bma07g00120 BCT 21 1046 Primary Pumps ATPases(2) AT4G00900 66.4 0.0e+00 1337.0
Bma11g00140 BCT 826 1524 Primary Pumps ATPases(2) AT4G00900 64.8 1.1e-254 876.7
Bma08g00475 . 561 889 Primary Pumps ATPases(2) AT4G00900 60.0 1.9e-105 380.9
Bma09g00344 . 1 126 Primary Pumps ATPases(2) AT4G02620 81.0 3.5e-54 207.6
Bma09g00341 . 1 106 Primary Pumps ATPases(2) AT4G02620 78.3 3.3e-44 174.5
Bma03g00617 BCT 6 514 Primary Pumps ATPases(2) AT1G76030 90.6 1.8e-263 904.8
Bma08g00610 BCT 1 277 Primary Pumps ATPases(2) AT1G76030 97.1 1.3e-154 543.1
Bma10g00027 . 1 110 Primary Pumps ATPases(2) AT3G01390 79.1 1.5e-37 152.1
Bma02g00645 . 228 558 Primary Pumps ATPases(2) AT1G12840 79.2 8.2e-152 533.5
Bma08g00531 . 1 261 Primary Pumps ATPases(2) AT3G58730 83.1 4.6e-117 417.5
Bma03g01337 . 1 261 Primary Pumps ATPases(2) AT3G58730 81.2 7.3e-115 410.2
Bma10g00372 . 3 449 Primary Pumps ATPases(2) AT3G42050 77.9 3.9e-201 697.6
Bma12g00538 . 3 165 Primary Pumps ATPases(2) AT2G16510 100.0 1.8e-74 275.4
Bma05g00418 . 3 165 Primary Pumps ATPases(2) AT2G16510 100.0 1.8e-74 275.4
Bma01g00735 BCT 4 166 Primary Pumps ATPases(2) AT2G16510 99.4 2.3e-74 275.0
Bma05g00155 BCT 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 2.3e-74 275.0
Bma03g00617 BCT 1 514 Primary Pumps ATPases(2) AT4G38510 91.2 3.5e-267 917.1
Bma08g00610 BCT 1 277 Primary Pumps ATPases(2) AT4G38510 98.2 2.5e-156 548.9
Bma12g00052 . 1 183 Primary Pumps ATPases(2) AT1G64200 75.9 1.2e-69 259.6
Bma12g00600 BCT 1 183 Primary Pumps ATPases(2) AT1G64200 75.4 5.8e-69 257.3
Bma05g00848 BCT 1 183 Primary Pumps ATPases(2) AT1G64200 74.1 8.4e-68 253.4
Bma03g00617 BCT 9 514 Primary Pumps ATPases(2) AT1G20260 90.9 5.1e-263 903.3
Bma08g00610 BCT 1 277 Primary Pumps ATPases(2) AT1G20260 97.1 1.3e-154 543.1
Bma07g00127 . 1 794 Primary Pumps ATPases(2) AT2G28520 77.0 0.0e+00 1250.0
Bma05g00148 . 1 805 Primary Pumps ATPases(2) AT2G28520 58.7 1.2e-277 952.6
Bma08g00785 BCT 10 730 Primary Pumps ATPases(2) AT2G28520 57.8 1.5e-254 875.9
Bma14g01542 . 1 351 Primary Pumps ATPases(2) AT3G28715 90.9 5.3e-190 660.2
Bma12g00052 . 1 226 Primary Pumps ATPases(2) AT4G11150 80.5 1.1e-95 346.3
Bma12g00600 BCT 1 220 Primary Pumps ATPases(2) AT4G11150 79.5 1.3e-91 332.8
Bma05g00848 BCT 1 220 Primary Pumps ATPases(2) AT4G11150 77.3 5.5e-90 327.4
Bma09g01011 BCT 1 623 Primary Pumps ATPases(2) AT1G78900 93.9 0.0e+00 1178.3
Bma15g00289 BCT 44 387 Primary Pumps ATPases(2) AT1G78900 93.6 1.8e-183 639.4
Bma03g00617 BCT 6 514 Primary Pumps ATPases(2) AT1G76030 90.6 1.8e-263 904.8
Bma08g00610 BCT 1 277 Primary Pumps ATPases(2) AT1G76030 97.1 1.3e-154 543.1
Bma03g00617 BCT 1 514 Primary Pumps ATPases(2) AT4G38510 91.2 3.5e-267 917.1
Bma08g00610 BCT 1 277 Primary Pumps ATPases(2) AT4G38510 98.2 2.5e-156 548.9
Bma03g00617 BCT 9 514 Primary Pumps ATPases(2) AT1G20260 90.9 5.1e-263 903.3
Bma08g00610 BCT 1 277 Primary Pumps ATPases(2) AT1G20260 97.1 1.3e-154 543.1
Bma02g00645 . 228 558 Primary Pumps ATPases(2) AT1G12840 79.2 8.2e-152 533.5
Bma08g00531 . 1 261 Primary Pumps ATPases(2) AT3G58730 83.1 4.6e-117 417.5
Bma03g01337 . 1 261 Primary Pumps ATPases(2) AT3G58730 81.2 7.3e-115 410.2
Bma12g00052 . 1 226 Primary Pumps ATPases(2) AT4G11150 80.5 1.1e-95 346.3
Bma12g00600 BCT 1 220 Primary Pumps ATPases(2) AT4G11150 79.5 1.3e-91 332.8
Bma05g00848 BCT 1 220 Primary Pumps ATPases(2) AT4G11150 77.3 5.5e-90 327.4
Bma12g00052 . 1 226 Primary Pumps ATPases(2) AT3G08560 69.7 6.7e-83 303.9
Bma12g00600 BCT 1 220 Primary Pumps ATPases(2) AT3G08560 69.8 2.1e-81 298.9
Bma05g00848 BCT 1 220 Primary Pumps ATPases(2) AT3G08560 68.0 4.2e-77 284.6
Bma12g00052 . 1 183 Primary Pumps ATPases(2) AT1G64200 75.9 1.2e-69 259.6
Bma12g00600 BCT 1 183 Primary Pumps ATPases(2) AT1G64200 75.4 5.8e-69 257.3
Bma05g00848 BCT 1 183 Primary Pumps ATPases(2) AT1G64200 74.1 8.4e-68 253.4
Bma09g00344 . 1 126 Primary Pumps ATPases(2) AT4G02620 81.0 3.5e-54 207.6
Bma09g00341 . 1 106 Primary Pumps ATPases(2) AT4G02620 78.3 3.3e-44 174.5
Bma10g00027 . 1 110 Primary Pumps ATPases(2) AT3G01390 79.1 1.5e-37 152.1
Bma10g00372 . 3 449 Primary Pumps ATPases(2) AT3G42050 77.9 3.9e-201 697.6
Bma07g00127 . 1 794 Primary Pumps ATPases(2) AT2G28520 77.0 0.0e+00 1250.0
Bma05g00148 . 1 805 Primary Pumps ATPases(2) AT2G28520 58.7 1.2e-277 952.6
Bma08g00785 BCT 10 730 Primary Pumps ATPases(2) AT2G28520 57.8 1.5e-254 875.9
Bma05g00148 . 1 809 Primary Pumps ATPases(2) AT2G21410 67.5 0.0e+00 1106.3
Bma08g00785 BCT 6 735 Primary Pumps ATPases(2) AT2G21410 69.9 0.0e+00 1095.1
Bma07g00127 . 9 799 Primary Pumps ATPases(2) AT2G21410 59.4 1.7e-282 968.8
Bma03g00566 BCT 717 1334 Primary Pumps ATPases(2) AT2G21410 60.2 4.3e-246 847.8
Bma05g00148 . 1 809 Primary Pumps ATPases(2) AT4G39080 68.9 0.0e+00 1119.4
Bma08g00785 BCT 8 735 Primary Pumps ATPases(2) AT4G39080 70.5 0.0e+00 1095.1
Bma07g00127 . 9 799 Primary Pumps ATPases(2) AT4G39080 59.9 6.0e-280 960.3
Bma03g00566 BCT 717 1334 Primary Pumps ATPases(2) AT4G39080 61.2 1.6e-248 855.9
Bma01g00735 BCT 29 166 Primary Pumps ATPases(2) AT4G34720 100.0 5.7e-61 230.3
Bma12g00538 . 28 165 Primary Pumps ATPases(2) AT4G34720 100.0 5.7e-61 230.3
Bma05g00155 BCT 28 165 Primary Pumps ATPases(2) AT4G34720 100.0 5.7e-61 230.3
Bma05g00418 . 28 165 Primary Pumps ATPases(2) AT4G34720 100.0 5.7e-61 230.3
Bma12g00538 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.1e-52 202.6
Bma05g00418 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.1e-52 202.6
Bma01g00735 BCT 2 123 Primary Pumps ATPases(2) AT1G19910 97.5 1.4e-52 202.2
Bma05g00155 BCT 1 122 Primary Pumps ATPases(2) AT1G19910 97.5 1.4e-52 202.2
Bma01g00735 BCT 29 166 Primary Pumps ATPases(2) AT4G38920 100.0 1.6e-60 228.8
Bma12g00538 . 28 165 Primary Pumps ATPases(2) AT4G38920 100.0 1.6e-60 228.8
Bma05g00155 BCT 28 165 Primary Pumps ATPases(2) AT4G38920 100.0 1.6e-60 228.8
Bma05g00418 . 28 165 Primary Pumps ATPases(2) AT4G38920 100.0 1.6e-60 228.8
Bma12g00538 . 2 165 Primary Pumps ATPases(2) AT1G75630 81.3 5.7e-67 250.8
Bma05g00418 . 2 165 Primary Pumps ATPases(2) AT1G75630 81.3 5.7e-67 250.8
Bma01g00735 BCT 3 166 Primary Pumps ATPases(2) AT1G75630 80.8 7.4e-67 250.4
Bma05g00155 BCT 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 7.4e-67 250.4
Bma12g00538 . 3 165 Primary Pumps ATPases(2) AT2G16510 100.0 1.8e-74 275.4
Bma05g00418 . 3 165 Primary Pumps ATPases(2) AT2G16510 100.0 1.8e-74 275.4
Bma01g00735 BCT 4 166 Primary Pumps ATPases(2) AT2G16510 99.4 2.3e-74 275.0
Bma05g00155 BCT 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 2.3e-74 275.0
Bma04g00059 BCT 1 180 Primary Pumps ATPases(2) AT4G32530 70.0 1.4e-68 256.1
Bma01g02155 BCT 1 180 Primary Pumps ATPases(2) AT4G32530 69.0 5.1e-66 247.7
Bma01g02159 . 1 180 Primary Pumps ATPases(2) AT4G32530 69.0 5.1e-66 247.7
Bma04g00059 BCT 1 180 Primary Pumps ATPases(2) AT2G25610 86.7 4.3e-71 264.6
Bma01g02155 BCT 1 180 Primary Pumps ATPases(2) AT2G25610 86.7 4.0e-69 258.1
Bma01g02159 . 1 180 Primary Pumps ATPases(2) AT2G25610 86.7 4.0e-69 258.1
Bma14g01542 . 1 351 Primary Pumps ATPases(2) AT3G28710 93.2 4.6e-197 683.7
Bma14g01542 . 1 351 Primary Pumps ATPases(2) AT3G28715 90.9 5.3e-190 660.2
Bma07g00120 BCT 1 1065 Primary Pumps ATPases(2) AT1G07810 81.3 0.0e+00 1696.4
Bma11g00140 BCT 826 1543 Primary Pumps ATPases(2) AT1G07810 78.6 0.0e+00 1093.6
Bma08g00475 . 561 888 Primary Pumps ATPases(2) AT1G07810 77.8 2.0e-142 503.8
Bma07g00120 BCT 21 1046 Primary Pumps ATPases(2) AT4G00900 66.4 0.0e+00 1337.0
Bma11g00140 BCT 826 1524 Primary Pumps ATPases(2) AT4G00900 64.8 1.1e-254 876.7
Bma08g00475 . 561 889 Primary Pumps ATPases(2) AT4G00900 60.0 1.9e-105 380.9
Bma05g00029 . 1 995 Primary Pumps ATPases(2) AT1G10130 81.7 0.0e+00 1613.6
Bma07g00120 BCT 1 1065 Primary Pumps ATPases(2) AT1G07670 80.8 0.0e+00 1693.7
Bma11g00140 BCT 826 1543 Primary Pumps ATPases(2) AT1G07670 77.7 0.0e+00 1088.9
Bma08g00475 . 561 888 Primary Pumps ATPases(2) AT1G07670 77.2 2.2e-141 500.4
       

Syn-Orthogroups


Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000593 4 3 2 4 4 2 6 2 1 3 2 3 4 3 3 5 3 7 5 3 3 4 3 3 2 3 3 6 3 3 102
       

Transcriptome


Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00538 Bma_Chr12 FPKM 124.242607 140.764786 437.346619 429.010406 56.871174 66.393059 52.454433 7.404635 6.445945 6.921141