Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00538 ATGTCTTCCACCTTCAGCGGCGATGAAACTGCTCCCTTTTTCGGCTTCCTTGGCGCCGCTGCTGCTCTTGTCTTCTCCTGTATGGGAGCTGCGTATGGTACCGCAAAGAGTGGTGTTGGTGTGGCTTCAATGGGGGTAATGAGGCCCGAGCTGGTTATGAAATCTATTGTTCCAGTAGTTATGGCTGGAGTTTTGGGGATATATGGTTTGATTATTGCTGTGATTATCAGCACTGGGATCAATCCCAAGGCCAAATCGTATTACCTATTTGATGGTTATGCACATTTGTCATCTGGACTTGCTTGTGGCCTGGCTGGGCTGTCAGCAGGAATGGCAATTGGTATTGTTGGCGATGCTGGTGTCCGAGCCAACGCACAACAGCCGAAACTTTTTGTTGGGATGATTTTGATTCTCATCTTTGCTGAGGCGCTGGCACTCTATGGCCTCATTGTTGGCATCATCTTGTCTTCACGAGCTGGCCAGTCCAGAGCAGAGTAG 498 49.4 MSSTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 21225905 21228128 - Bma007661.1 Bma12g00538 91964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00538 165 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 3 165 - -
Bma12g00538 165 SUPERFAMILY F1F0 ATP synthase subunit C 13 77 IPR035921 -
Bma12g00538 165 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 3 165 - -
Bma12g00538 165 SUPERFAMILY F1F0 ATP synthase subunit C 87 156 IPR035921 -
Bma12g00538 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 30 54 IPR000245 GO:0033179|GO:0046961|GO:1902600
Bma12g00538 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 56 80 IPR000245 GO:0033179|GO:0046961|GO:1902600
Bma12g00538 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 107 133 IPR000245 GO:0033179|GO:0046961|GO:1902600
Bma12g00538 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 134 157 IPR000245 GO:0033179|GO:0046961|GO:1902600
Bma12g00538 165 TIGRFAM V_ATP_synt_C: V-type ATPase, C subunit 13 121 IPR011555 GO:0033179|GO:0046961|GO:1902600
Bma12g00538 165 CDD ATP-synt_Vo_c_ATP6C_rpt2 89 156 - -
Bma12g00538 165 CDD ATP-synt_Vo_c_ATP6C_rpt1 13 80 - -
Bma12g00538 165 Gene3D - 11 162 IPR035921 -
Bma12g00538 165 Pfam ATP synthase subunit C 97 155 IPR002379 GO:0015078|GO:0033177|GO:1902600
Bma12g00538 165 Pfam ATP synthase subunit C 17 76 IPR002379 GO:0015078|GO:0033177|GO:1902600
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00418 Bma-Chr5:13219011 Bma12g00538 Bma-Chr12:21225905 1.70E-113 dispersed
Bma12g00538 Bma-Chr12:21225905 Bma05g00155 Bma-Chr5:4567325 4.57E-113 transposed
Bma12g00538 Bma-Chr12:21225905 Bma01g00735 Bma-Chr1:6732366 3.56E-113 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00538 K02155 - cit:102607521 288.5