Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00541 ATGCAGTTTGAAACCCTCGCTCTACGTCCGTCGACCTCTGCTCAGTTACTGAAACCTTCCTTTCGGAAACCTATATCTCGAGCTTTTGTTTTCTGCTCCCATCCTCCTCATTCTTTCTCCGTCCGCTTTCATCCGAATGCCCCTACGTTGATTCGGAAACGCTATGGTAAACGGTTTGGAATTCCTTGCAGTAAAAATAATATAGAAATCGTCGACTGTGGCCGTGAAGTTGAAAGCGAAAGTGGTAATGGAAAAGAAGAAAAAGGCGGCGGAGAAGTTTTGGAGATTCAGAGTAAAAAACTGGAGAGCCAGGGATTGTGGGATCAAATGAAGGAGATTGTAAAGTTTACTGGTCCTGCCACTGGGCTGTGGCTGTGCGGGCCTTTGATGAGCATCATTGATACTGCGGTCATTGGTCAAGGAAGCTCCGTTGAGCTCGCTGCATTAGGGCCAGGAACTGTTTTCTGTGACTATACAAGTTATGTTTTCATGTTTCTTTCTATTGCTACTTCCAACATGGTAGCCACTGCCCTTGCCCGACAGGATAAAAGTGAAGTGCAGCATCATATATCCGTCTTGCTCTTTCTCGGTTTGATCTCTGGTTTGTTGATGCTTTTGTTCACAAAACTATGGGGTTCAATGGCTCTAACTGCTTTTGCTGGCCCAAGGAATACACATCTTGTTCCAGCAGCAGACTCATACATTCAGATAAGAGGTTTGGCCTGGCCTGCAGTTCTTGTTGGATGGGTTGCGCAAAGTGCAAGTCTTGGTATGAAAGATTCCTGGGGACCTCTGAAGGCTTTAGCGGTTGCAAGTGTTGTAAACGGCCTAGGTGATATAATCTTGTGCATGGTTCTAGGCTATGGTATTGCTGGTGCAGCGTGGGCAACAATGGCATCACAAGTCATTGCCGCTTATATGATGATTGCAACTTTAAACAAAAAAGGATACGATGCATTTTCCATTTCTATTCCTTCGCTTAAAGAATTAATATCAATACTTGGACTTGCTGCTCCAGTGTTTCTAACAATGATGTCAAAGGTGGCTTTTTACAGTCTCCTTGTTTATTTTGCTACGTCTATGGGCACACATACTATGGCTGCTCATCAGGTCATGATCCAAGCTTTATGTATGTGCACGGTATGGGGTGAACCACTGTCTCAAACTGCACAGTCATTTATGCCTGAGTTGATATATGGAGCCGGTCGAAGTTTGGAAAAGGCCAGGATGTTGCTCAAGTCACTTGTAATCATTGGAGCTATACTTGGATCATTATTAGGGGTAATTGGAACTTGTGTTCCTTGGTTGTTCCCTAATATTTTTACTCGGGATCATATTGTCATCCAGGAGATGCACAAGGTATTGATCCCATTCTTTATTGCATTAGCAATAACACCTTCGACTCACAGCCTTGAAGGAACTTTACTGGCTGGACGGGACCTCAAATTTATTAGTTTGACAATGACTGGATGCTTTTCTCTTGGTGCCCTTCTGTTGTTGCTTGTAACCAGTAAAGGGTTTGGTCTGCAAGGCTGCTGGTACGCCCTTGTTGGATTTCAATGGGCTCGCTTTCTCATGGCCCTCCAGCGCCTTCTTTCTCCCAATGGTATACTTTACTCAAATGACTTGACCCGGTACAAAACGGAAAAATTGAAGGCTGCATAG 1665 44.32 MQFETLALRPSTSAQLLKPSFRKPISRAFVFCSHPPHSFSVRFHPNAPTLIRKRYGKRFGIPCSKNNIEIVDCGREVESESGNGKEEKGGGEVLEIQSKKLESQGLWDQMKEIVKFTGPATGLWLCGPLMSIIDTAVIGQGSSVELAALGPGTVFCDYTSYVFMFLSIATSNMVATALARQDKSEVQHHISVLLFLGLISGLLMLLFTKLWGSMALTAFAGPRNTHLVPAADSYIQIRGLAWPAVLVGWVAQSASLGMKDSWGPLKALAVASVVNGLGDIILCMVLGYGIAGAAWATMASQVIAAYMMIATLNKKGYDAFSISIPSLKELISILGLAAPVFLTMMSKVAFYSLLVYFATSMGTHTMAAHQVMIQALCMCTVWGEPLSQTAQSFMPELIYGAGRSLEKARMLLKSLVIIGAILGSLLGVIGTCVPWLFPNIFTRDHIVIQEMHKVLIPFFIALAITPSTHSLEGTLLAGRDLKFISLTMTGCFSLGALLLLLVTSKGFGLQGCWYALVGFQWARFLMALQRLLSPNGILYSNDLTRYKTEKLKAA 554
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 21663111 21667713 + Bma007670.1 Bma12g00541 91967

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00541 554 Pfam MatE 128 275 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Bma12g00541 554 CDD MATE_DinF_like 109 533 IPR044644 -
Bma12g00541 554 PANTHER PROTEIN DETOXIFICATION 44, CHLOROPLASTIC-RELATED 54 543 IPR044644 -
Bma12g00541 554 PANTHER PROTEIN DETOXIFICATION 46, CHLOROPLASTIC 54 543 - -
Bma12g00541 554 TIGRFAM matE: MATE efflux family protein 125 513 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00541 K03327 TC.MATE, SLC47A, norM, mdtK, dinF; multidrug resistance protein, MATE family - rcu:8284354 723.005
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma03g00570 Bma12g00541 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00570 Bma-Chr3:4742342 Bma12g00541 Bma-Chr12:21663111 0 dispersed
Bma12g00541 Bma-Chr12:21663111 Bma12g00863 Bma-Chr12:39564798 5.07E-14 dispersed
Bma12g00541 Bma-Chr12:21663111 Bma12g00542 Bma-Chr12:21825061 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g24 . . Bda06g00961 . . . . Bma12g00541 . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi10g00412 . . . Blo04g00535 . . Bda14g00576 . . Bma03g00570 . Sed01g0265 Cmo02g00371 . . . . . Cpe16g00272 Cpe05g01288 Bhi10g01946 Tan05g1243 Cmetu11g1869 . Hepe08g0979 . . . . . . . . . . Csa02g01304 . Cme11g00165
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002254 2 5 2 3 2 2 2 2 2 1 1 2 2 1 2 3 2 2 2 2 2 1 2 2 2 1 1 4 4 2 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00541 Bma_Chr12 FPKM 103.087128 112.917221 1928.609375 1930.213257 19.571442 31.331118 22.071953 2.821228 2.55084 2.43477