Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00542 TGTCCACCTCATCATCTTTCTCTCTCCGCCATTTCCAGTTCTGGTTTCCCCGGACCGGTTGTTTCAGGCTTGGAGATGCAGTTTGAAACCCTCGCTCTCCGTCCGTCGACCTCTGCTCAGTTACTGAAACCTTCCTTTCGGAAACCTATATCTCGAGCTTTTGTTTTCTGCTCCCATCCTCCTCATTCTTTCTCCGTCGTTCGCTTTCATCCGAATGCGCCTACGTTGATTCGGAAACGCTATGGTAAACGGTTTGGAATTCCTTGCAGTAAAAATAATATAGAAATCGTCGACTGTGGCCGTGAAGTTGAAAGCGAAAGTGGTAACGGAAAAGAAGAAAAAGGCGGCGGAGAAGTTTTGGAGATTCAGAGTAAAAAACTGGAGAGCCAGGGATTGTGGGATCAAATGAAGGAGATTGTAAAGTTTACTGGTCCTGCCACTGGGCTGTGGCTGTGCGGGCCTTTGATGAGCATCATTGATACTGCGGTCATTGGTCAAGGAAGCTCCGTTGAGCTCGCTGCATTAGCAGGGCCAGGAACTGTTTTCTGTGACTATACAAGTTATGTTTTCATGTTTCTTTCTATTGCTACTTCCAACATGGTAGCCACTGCCCTTGCCCGACAGGATAAAAGTGAAGTGCAGCATCATATATCCGTCTTGCTCTTTCTCGGTTTGATCTCTGGTTTATTAATGCTTTTGTTCACAAAACTATGGGGTTCAATGGCTCTAACTGCTTTTGCTGGCCCAAGGAATACACATCTTGTTCCAGCAGCAGACTCATACATTCAGATAAGAGGTTTGGCCTGGCCTGCAGTTCTTGTTGGATGGGTTGCGCAAAGTGCAAGTCTTGGTATGAAAGATTCCTGGGGACCTCTGAAGGCTTTAGCGGTTGCAAGTGTTGTAAACGGCCTAGGTGATATAATCTTGTGCATGGTTCTAGGCTATGGTATTGCTGGTGCAGCGTGGGCAACAATGGCATCACAAGTCATTGCCGCTTATATGATGATTGCAACTTTAAACAAAAAAGGATACGATGCATTTTCCATTTCTATTCCTTCGCTTAAAGAATTAATATCAATACTTGGACTTGCTGCTCCAGTGTTTCTAACAATGATGTCAAAGGTGGCTTTTTACAGTCTCCTTGTTTATTTTGCTACGTCTATGGGCACACATACTATGGCTGCTCATCAGGTCATGATCCAAGCTTTATGTATGTGCACGGTATGGGGTGAACCACTGTCTCAAACTGCACAGTCATTTATGCCTGAGTTGATATATGGAGCCGGTCGAAGTTTGGAAAAGGCCAGGATGTTGCTCAAGTCACTTGTAATCATTGGAGCTATACTTGGATCATTATTAGGGGTAATTGGAACTTGTGTTCCTTGGTTGTTCCCTAATATTTTTACTCGGGATCATATTGTCATCCAGGAGATGCACAAGGTCTTGATCCCATTCTTTATTGCATTAGCAATAACACCTTCGACTCACAGCCTTGAAGGAACTTTACTGGCTGGACGGGACCTCAAATTTATTAGTTTGACAATGACTGGATGCTTTTCTCTTGGTGCCCTTCTGTTGTTGCTTGTAACCAGTAAAGGGTTTGGTCTGCAAGGCTGCTGGTACGCCCTTGTTGGATTTCAATGGGCTCGCTTTCTCATGGCCCTCCAGCGCCTTCTTTCTCCCAATGGTATACTTTACTCAAATGACTTGACCCGGTACAAAACGGAAAAATTGAAGGCTGCATAG 1746 44.79 CPPHHLSLSAISSSGFPGPVVSGLEMQFETLALRPSTSAQLLKPSFRKPISRAFVFCSHPPHSFSVVRFHPNAPTLIRKRYGKRFGIPCSKNNIEIVDCGREVESESGNGKEEKGGGEVLEIQSKKLESQGLWDQMKEIVKFTGPATGLWLCGPLMSIIDTAVIGQGSSVELAALAGPGTVFCDYTSYVFMFLSIATSNMVATALARQDKSEVQHHISVLLFLGLISGLLMLLFTKLWGSMALTAFAGPRNTHLVPAADSYIQIRGLAWPAVLVGWVAQSASLGMKDSWGPLKALAVASVVNGLGDIILCMVLGYGIAGAAWATMASQVIAAYMMIATLNKKGYDAFSISIPSLKELISILGLAAPVFLTMMSKVAFYSLLVYFATSMGTHTMAAHQVMIQALCMCTVWGEPLSQTAQSFMPELIYGAGRSLEKARMLLKSLVIIGAILGSLLGVIGTCVPWLFPNIFTRDHIVIQEMHKVLIPFFIALAITPSTHSLEGTLLAGRDLKFISLTMTGCFSLGALLLLLVTSKGFGLQGCWYALVGFQWARFLMALQRLLSPNGILYSNDLTRYKTEKLKAA 581
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 21825061 21829738 + Bma007674.1 Bma12g00542 91968

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00542 581 CDD MATE_DinF_like 135 560 IPR044644 -
Bma12g00542 581 Pfam MatE 154 302 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Bma12g00542 581 PANTHER PROTEIN DETOXIFICATION 46, CHLOROPLASTIC 65 570 - -
Bma12g00542 581 PANTHER PROTEIN DETOXIFICATION 44, CHLOROPLASTIC-RELATED 65 570 IPR044644 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00542 K03327 TC.MATE, SLC47A, norM, mdtK, dinF; multidrug resistance protein, MATE family - rcu:8284354 716.842
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g00542 Bma-Chr12:21825061 Bma12g00863 Bma-Chr12:39564798 2.20E-13 dispersed
Bma12g00541 Bma-Chr12:21663111 Bma12g00542 Bma-Chr12:21825061 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g23 . Blo15g00670 . . . . . Bma12g00542 . . Cma02g00367 Cma20g00814 Car02g00235 Car20g00698 . . . . . . . . . . . . . . . . . . . Cone3ag1216 Cone10ag1100 . . Chy11g00340 . . . . . Bpe15g00846 . . . Sed01g0267 Cmo02g00372 Cmo20g00822 . . . . . . Bhi10g01948 Tan05g1245 . . Hepe08g0980 . . . . . . . . . . Csa02g01303 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002254 2 5 2 3 2 2 2 2 2 1 1 2 2 1 2 3 2 2 2 2 2 1 2 2 2 1 1 4 4 2 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00542 Bma_Chr12 FPKM 160.96254 167.011948 1574.737305 1481.408447 162.593231 217.114685 158.365219 45.562313 50.272263 45.44096