Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00543 ATGAAGATCCGATGCGATGTTTGTGGCAAACGCGAAGCCTCCTTCTTTTGCTCCGCCGACGAAGCCGCTCTCTGCGACGGCTGTGACAGCCATGTCCACCATGCGAACAAGCTCGCCGGACAACACACTCGTTTCTCTCTCCTCAATCCAACCTTCAAAGAATCACCTCTCTGCGACATCTGCCAGGACAGGCGAGCTTTCCTTTTCTGTCAAGAAGACCGGGCAATCCTCTGTAGAGAATGCGACGTTCCAATTCACAGAGCAAACGAACATACCCAGAAACACAATAGATTTCTTCTTACAGGCGTCAAACTTTCTTCAACTTCTTCGTTCTACCCAACTTGTTCTTCGTCCAGTGGGTGTGAAGCAGCCATTGACATCGAAAGTAGAAGGTCGAATACACGGCCAAAGAGATCATCAAAGGCAGCGTCCAATGGAGTATCTTCTTGTCCGTCTGAAATATCTCAGGCGGAAGGCATTGATTCTGGAACCTTCTCAGCAAGTAGTATATCAGAGTACTTAGAGACGTTGCCTGGATGGGGTATAGAAGATTTTCTTGATCCATCATTTTCCTCCCATGGCTTCTGTAAAGTTTTAGGTAGACCCAACATGGAATGA 618 47.57 MKIRCDVCGKREASFFCSADEAALCDGCDSHVHHANKLAGQHTRFSLLNPTFKESPLCDICQDRRAFLFCQEDRAILCRECDVPIHRANEHTQKHNRFLLTGVKLSSTSSFYPTCSSSSGCEAAIDIESRRSNTRPKRSSKAASNGVSSCPSEISQAEGIDSGTFSASSISEYLETLPGWGIEDFLDPSFSSHGFCKVLGRPNME 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 21913214 21913915 - Bma007676.1 Bma12g00543 91969

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00543 205 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 197 - -
Bma12g00543 205 MobiDBLite consensus disorder prediction 130 156 - -
Bma12g00543 205 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Bma12g00543 205 CDD Bbox1_BBX-like 57 100 - -
Bma12g00543 205 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Bma12g00543 205 Gene3D Classic Zinc Finger 1 98 - -
Bma12g00543 205 CDD Bbox1_BBX-like 5 47 - -
Bma12g00543 205 PANTHER B-BOX ZINC FINGER PROTEIN 20 1 197 - -
Bma12g00543 205 SMART bboxneu5 4 47 IPR000315 GO:0008270
Bma12g00543 205 SMART bboxneu5 53 100 IPR000315 GO:0008270
Bma12g00543 205 MobiDBLite consensus disorder prediction 138 156 - -
Bma12g00543 205 Pfam B-box zinc finger 54 92 IPR000315 GO:0008270
Bma12g00543 205 Pfam B-box zinc finger 3 44 IPR000315 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00543 - - - zju:107426654 268.085
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00739 Bma-Chr1:6771919 Bma12g00543 Bma-Chr12:21913214 8.50E-63 dispersed
Bma01g02354 Bma-Chr1:81170438 Bma12g00543 Bma-Chr12:21913214 3.44E-64 dispersed
Bma10g00461 Bma-Chr10:5244910 Bma12g00543 Bma-Chr12:21913214 1.45E-36 dispersed
Bma12g00543 Bma-Chr12:21913214 Bma13g00920 Bma-Chr13:39618056 3.54E-35 dispersed
Bma12g00543 Bma-Chr12:21913214 Bma05g00152 Bma-Chr5:4548087 1.31E-59 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g18 . . Bda06g00954 Bda08g00955 . . . Bma12g00543 . . . Cma20g00817 . Car20g00702 . Cpe04g00107 Cpe15g00559 . . . . . . . Cla02g00492 Cam02g0502 Cec02g0502 Cco02g0508 Clacu02g0505 Cmu02g0501 Cre02g0833 . . Cone3ag1218 Cone10ag1103 Lsi10g00408 Csa07g00027 Chy11g00343 Cme01g01353 Blo04g00532 . . Bda14g00574 Bpe15g00849 Bpe05g00323 . . Sed05g3539 . Cmo20g00825 . Cma19g00687 . . Cpe16g00269 . Bhi10g01956 Tan05g1250 Cmetu11g0516 . Hepe08g0983 . . . . . . . . . . Csa02g01300 . Cme11g00162
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma02g00460 . 24 395 C2C2-CO-like Transcription Factor Family AT5G15850 52.3 2.0e-59 226.5
Bma02g00460 . 12 395 C2C2-CO-like Transcription Factor Family AT3G02380 53.2 7.5e-67 251.1
Bma01g01259 . 1 316 C2C2-CO-like Transcription Factor Family AT5G24930 52.7 1.1e-60 230.7
Bma06g00924 BCT 4 342 C2C2-CO-like Transcription Factor Family AT5G57660 51.8 3.0e-63 239.2
Bma06g00932 . 4 342 C2C2-CO-like Transcription Factor Family AT5G57660 51.8 3.0e-63 239.2
Bma12g00873 BCT,CCT 1 408 C2C2-CO-like Transcription Factor Family AT3G07650 53.8 4.6e-78 288.5
Bma02g01294 BCT,CCT 1 413 C2C2-CO-like Transcription Factor Family AT3G07650 52.8 1.3e-77 287.0
Bma12g00873 BCT,CCT 1 408 C2C2-CO-like Transcription Factor Family AT5G48250 51.9 1.5e-76 283.5
Bma02g01294 BCT,CCT 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 50.9 1.6e-75 280.0
Bma12g00873 BCT,CCT 1 408 C2C2-CO-like Transcription Factor Family AT5G48250 51.9 1.5e-76 283.5
Bma02g01294 BCT,CCT 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 50.9 1.6e-75 280.0
Bma12g00543 . 1 197 C2C2-CO-like Transcription Factor Family AT1G75540 57.5 2.4e-54 209.5
Bma15g00960 CCT,ECH 1 177 C2C2-CO-like Transcription Factor Family AT2G21320 62.1 6.9e-53 203.8
Bma06g00103 CCT,ECH 1 171 C2C2-CO-like Transcription Factor Family AT2G21320 59.6 1.2e-49 193.0
Bma15g00960 CCT,ECH 1 176 C2C2-CO-like Transcription Factor Family AT4G38960 61.6 4.6e-55 211.1
Bma06g00103 CCT,ECH 1 109 C2C2-CO-like Transcription Factor Family AT4G38960 80.7 2.2e-49 192.2
Bma12g00543 . 1 193 C2C2-CO-like Transcription Factor Family AT4G39070 58.0 1.2e-55 213.4
Bma05g00152 BCT 1 208 C2C2-CO-like Transcription Factor Family AT4G39070 52.6 6.1e-47 184.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000846 4 5 1 2 4 3 4 3 3 3 3 3 4 3 3 4 3 2 4 3 3 3 3 4 3 3 2 3 2 0 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58112 PF00643 zf-B_box 1.20E-07 No_clan Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00543 Bma_Chr12 FPKM 7.826087 7.422649 56.4813 50.441734 26.538244 33.281292 23.60475 0.776177 1.40736 0.851516