Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00543 ATGAAGATCCGATGCGATGTTTGTGGCAAACGCGAAGCCTCCTTCTTTTGCTCCGCCGACGAAGCCGCTCTCTGCGACGGCTGTGACAGCCATGTCCACCATGCGAACAAGCTCGCCGGACAACACACTCGTTTCTCTCTCCTCAATCCAACCTTCAAAGAATCACCTCTCTGCGACATCTGCCAGGACAGGCGAGCTTTCCTTTTCTGTCAAGAAGACCGGGCAATCCTCTGTAGAGAATGCGACGTTCCAATTCACAGAGCAAACGAACATACCCAGAAACACAATAGATTTCTTCTTACAGGCGTCAAACTTTCTTCAACTTCTTCGTTCTACCCAACTTGTTCTTCGTCCAGTGGGTGTGAAGCAGCCATTGACATCGAAAGTAGAAGGTCGAATACACGGCCAAAGAGATCATCAAAGGCAGCGTCCAATGGAGTATCTTCTTGTCCGTCTGAAATATCTCAGGCGGAAGGCATTGATTCTGGAACCTTCTCAGCAAGTAGTATATCAGAGTACTTAGAGACGTTGCCTGGATGGGGTATAGAAGATTTTCTTGATCCATCATTTTCCTCCCATGGCTTCTGTAAAGTTTTAGGTAGACCCAACATGGAATGA 618 47.57 MKIRCDVCGKREASFFCSADEAALCDGCDSHVHHANKLAGQHTRFSLLNPTFKESPLCDICQDRRAFLFCQEDRAILCRECDVPIHRANEHTQKHNRFLLTGVKLSSTSSFYPTCSSSSGCEAAIDIESRRSNTRPKRSSKAASNGVSSCPSEISQAEGIDSGTFSASSISEYLETLPGWGIEDFLDPSFSSHGFCKVLGRPNME 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 21913214 21913915 - Bma007676.1 Bma12g00543 91969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00543 205 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 197 - -
Bma12g00543 205 MobiDBLite consensus disorder prediction 130 156 - -
Bma12g00543 205 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Bma12g00543 205 CDD Bbox1_BBX-like 57 100 - -
Bma12g00543 205 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Bma12g00543 205 Gene3D Classic Zinc Finger 1 98 - -
Bma12g00543 205 CDD Bbox1_BBX-like 5 47 - -
Bma12g00543 205 PANTHER B-BOX ZINC FINGER PROTEIN 20 1 197 - -
Bma12g00543 205 SMART bboxneu5 4 47 IPR000315 GO:0008270
Bma12g00543 205 SMART bboxneu5 53 100 IPR000315 GO:0008270
Bma12g00543 205 MobiDBLite consensus disorder prediction 138 156 - -
Bma12g00543 205 Pfam B-box zinc finger 54 92 IPR000315 GO:0008270
Bma12g00543 205 Pfam B-box zinc finger 3 44 IPR000315 GO:0008270
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00739 Bma-Chr1:6771919 Bma12g00543 Bma-Chr12:21913214 8.50E-63 dispersed
Bma01g02354 Bma-Chr1:81170438 Bma12g00543 Bma-Chr12:21913214 3.44E-64 dispersed
Bma10g00461 Bma-Chr10:5244910 Bma12g00543 Bma-Chr12:21913214 1.45E-36 dispersed
Bma12g00543 Bma-Chr12:21913214 Bma13g00920 Bma-Chr13:39618056 3.54E-35 dispersed
Bma12g00543 Bma-Chr12:21913214 Bma05g00152 Bma-Chr5:4548087 1.31E-59 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58112 PF00643 zf-B_box 1.20E-07 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00543 - - zju:107426654 268.085