Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00547 ACAATGTCGAAGCTCGCAATCTTCCTATTTTTCATACAGTTTTTTCCATTTCTCTGCAAATCGTTCTCTCCTGAAAGCCCAACAGATCGTAAAGTCCTCGTATTGCTCGACGACCTCGCGCTCAAGTCCTCGCACTCTCTCTTCTTCAAGTCTCTGCAGTCTCGTGGCTTCCAGCTAGAATTCCGGCTAGCGGACGATCCGAAAATTGCTTTGCAGAGATATGGCCAGTATTTATATGATGCATTGATCTTGTTTTCTCCTACCATTGAACGCTTTGGAGGATCCATTGATCAGGCTGGTATCCTAGAATTTGTTGATTCTGGTCACGATCTAGTTCTCGCTGCAGATGTTAAAGCGTCTGATTTGATTCGAGAAATTGCCACAGAGTGTGGGGTCGACTTTGATGAGGACCCAGCAGCTGTGGTTATTGATCACACTAGTTATGCAGTTTCAGACTTTGAAGGAGATCACACATTAATTGCAAGTGATGATTTTATCAAGTCTGATGTGATTTTGGGAAAGGCAAAAATCGAGGCAATTGTATATTTATTTGGTTCTTATTTTAATTATTGTTTGGACAACTCTATACAGGCTCCAATACTTTTCAAGGGGATTGGTCATACATTAAACGCCGCCAATAATTTGGTGCTGAAAGCTCTCTCAAGTTCTCCTTCTGCATATTCTGCTAATCCCAAATCTAAGTTATCAAGTCCTCCATCACTAACCGGATCTTCTATTTCGTTGGTTTCTATAGTTCAGGCAAGAAACAATGCTCGAATTTTGATTGCTGGATCTTTAAGTTTATTCAGCGATGGGTATGAAACTTCTTTAATAAAGTGTGAAACATTGCATGACAAATCGGGTAATGAGCAATTTTTGACTGAACTCAGCAAGTGGGTTTTCCATGAAAGAGGACATCTCAAGGCAGTAAATGTAAGGCACCATAAACTTGGTGAAGTAAATGAACCAGCAATGTACAGAATCAATGACGAGCTGGAATATTCTGTTGAGATATATGAGTGGTCTGGCACTAGTTGGGAGCCATATGTGGCTAATGATGTTCAGCTGCAGTTTTACATGATGAGCCCCTATGTTTTGAAGAACTTGACTACCAACAAGAAGGGTCGATATTATACAACGTTTAAAGTTCCAGATATATACGGTGTTTTCCAATTCAAGATCGAGTACCAAAGGCTAGGCTACACAACCCTAACTCTATCAAAGCAGATTCCAGTCCGACCCTTTAGACACAATGAATACGAGAGGTTCATTCCTGCTGCTTATCCGTATTATGGAGCAGCTTTTTCCATGATGGCTGGTTTCTTTGTCTTCTCTGCCGTTCATTTATACAATAAGTAG 1359 40.69 TMSKLAIFLFFIQFFPFLCKSFSPESPTDRKVLVLLDDLALKSSHSLFFKSLQSRGFQLEFRLADDPKIALQRYGQYLYDALILFSPTIERFGGSIDQAGILEFVDSGHDLVLAADVKASDLIREIATECGVDFDEDPAAVVIDHTSYAVSDFEGDHTLIASDDFIKSDVILGKAKIEAIVYLFGSYFNYCLDNSIQAPILFKGIGHTLNAANNLVLKALSSSPSAYSANPKSKLSSPPSLTGSSISLVSIVQARNNARILIAGSLSLFSDGYETSLIKCETLHDKSGNEQFLTELSKWVFHERGHLKAVNVRHHKLGEVNEPAMYRINDELEYSVEIYEWSGTSWEPYVANDVQLQFYMMSPYVLKNLTTNKKGRYYTTFKVPDIYGVFQFKIEYQRLGYTTLTLSKQIPVRPFRHNEYERFIPAAYPYYGAAFSMMAGFFVFSAVHLYNK 452
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 22499412 22504440 + Bma007681.1 Bma12g00547 91973

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00547 452 PANTHER DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE 48 KDA SUBUNIT 2 185 - -
Bma12g00547 452 PANTHER DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE 48 KDA SUBUNIT 194 452 - -
Bma12g00547 452 PANTHER DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE 48 KDA SUBUNIT 2 185 IPR005013 GO:0005789|GO:0018279
Bma12g00547 452 Pfam Oligosaccharyltransferase 48 kDa subunit beta 31 452 IPR005013 GO:0005789|GO:0018279
Bma12g00547 452 PANTHER DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE 48 KDA SUBUNIT 194 452 IPR005013 GO:0005789|GO:0018279
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00547 K12670 WBP1; oligosaccharyltransferase complex subunit beta - gmx:100803270 671.003
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g554 Blo02g00794 . . Bda08g00902 Bpe07g00458 . . Bma12g00547 . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag1140 Cone10ag1151 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005584 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00547 Bma_Chr12 FPKM 103.640625 104.773796 135.210907 138.590042 16.222275 15.600161 15.480968 3.340774 3.047447 1.726033