Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00550 GGGATGTATGTCAGGAGAAATAAAAGACCAAAATTAGCTGACCATGGTAATGATACTTTGCGAATTGTTTCCTCTGCAATGGCTGATGCAGCTGAACAAAGGAGACTCAGAACTTCCGGAAACATAATTGATTACTCAAGCCCATTTTCCATTCCTGATTTGCTTGATTGTTTAGATTCTGGAAAATATGGGAGTGTCACGAAAGAAATAGAAGCCCTCATGGCTAAAAAGATGGAAATTCTTAACCCCTACATTTCACAGTATCCGGTTCTTTCTTCTATGTTTTTGCAAGTTGAAAGTCGGGTTAAGGAGGCCCAAAATTTTATAAATCATCAAGCTTCTCGTGTCACAACTAATGTCATTGATCTGGAGGATGACTCAGTTCCTTGTAAAGAAATGGCAGCATATCACAAGTCCGTGATAGTTATTGATTCAGATGATGAAAATTGTGGAAACAAAAAGCCTCCTCGTCTTTTTCAGGAAGTTGTGTTGGAAAAAGTTTCTGGAGAGCTTGATTACCATGCTCCATTGAGGCACTCTGATGATGGTAAAGTTACAAAGAATGGGGCAGCGGCAACACATTCTTTCACACATGAAACAAACTTTGTGAAAGATAAAGGTGTCTATTGTGGAGTTGAAGAGGAGGTGGATCAAGGAAGTGAGAGAGAAAATGATGGCCTCGACGATATTTGGACAGAGATGAATATGGCTTTAGAATGTTCAAAGGTACCTTCAGATGCTCCGGTAGTGTCGTCACTACATCAACCAGAAAATGATGACATGGAGGATTGCGATCATTCATTTGTCTTGAAGGATGACATTGGCTATGTTTGTCGCATTTGTGGTGTCATAGACAGGGGCATTGAAACCATTTTTGAGTTCCAATACAAAGTTAAAAAGAGTTCCCGAACTTACATGTCTGAATCTCGAAATGCTAGATACAAAGATATGGATATGGGTGGAGTTAAATGGTCTGAAGATGATATGACAGTGACTCAAATTTGTGCTCATCCAAGGCATATGAAACAAATGAAACCGCATCAAATTGAGGGTTTCAATTTTCTTATCAGCAACCTAGTGAGTGAAAATCCTGGGGGTTGTATTTTAGCCCATGCTCCAGGATCTGGAAAGACATTCATGATAATCAGTTTCATGCAAAGTTTCTTGGCTAAGTATCCGCATGCAAGACCTCTAGTTGTGCTTCCTAAGGGAATTTTAGCTACGTGGAAAAAGGAGTTTCAGACATGGCAAGTGGAAGATATTCCACTTTTGGACTTTTATTCTGTTAAAGCAGATAGCCGGTCTCAACAATTGGTGGTTTTGAAAAAGTGGGTCGAGAACAGAAGTATTCTTTTCTTGGGATATAAACAATTCTCTGCCATTATGTCTGACAGTGTATCCAGCGTGACGTCAACCTCGTGTCAGGAAATATTGTTGAAGGCTCCTTCAATTCTTATTTTGGATGAAGGGCACACCCCAAGAAATGAAAACACTGATGTGTTGCAAACTCTCGCAAAAGTTCAAACACCTAGAAAAGTTGTTCTTTCGGGTACTCTTTACCAAAATCATGTCAAAGAAGTATTCAATGTGTTGAATCTTGTTCGCCCAAAGTTTACACGATCGGAACTTTCCCGACCCATTATTAAACGTATCATGACTAGAGTGGATATAAGTGGTGTCCGGAAGAATGTCAAAATAGGGGCAAGTGCATCTTTTTATGACTTGGTAGAGCATACCCTTCAGAAGGATAAGGATTTTAGAAGAAAAGTGGCTGTCATTCAAGATTTGCGCGAGATGACCAGAAATGTCCTTCATTATTACAAAGGAGATTTCCTTGATGAGCTTCCTGGACTTGTTGACTTCACTGTAGTACTAAATCTCAGTCCCAAGCAGAAACATGAAGTTAAACAGTTGAAAAAGTTGCCCCGGAAGTTTAAAGTAAGTTCTGTTGGTAGTTCTATTTATCTGCACCCAAAATTGAAACATTTTCCTGAAATTTCTACCACAACTGATGAAAAAATGGACGAGATGTTAGATAACATAGACGTTAAAGATGGAGTCAAGGCAAAATTCTTTCTCACTGTGCTGAACTTATGTGAAGCAGCTGCGGAGAAACTATTGGTGTTTAGTCCATACCTTGTACCTCTAAAGTTTTTGGAGAGATTGGCCGTGAAGGCTAAAGGTTGGAGTCAAGGAAGAGAAATTTTTGTTATTTCAGGTGAATCGACTTCTGAGCAACGAGAGTTTTCCATGGACCGATTCAATAATTCACCAGATGCAAAAGTATTTTTTGGCTCCATTAAAGCATGTGGAGAGGGAATATCATTAGTAGGGGCTTCTCGAATCATTGTTTTGGACGTTCATCTTAACCCTTCTGTGACCCGCCAAGCCATAGGCCGTGCTTTTCGCCCTGGTCAAAAGAAAAAAGTATTTGCATATCGATTGGTTGCTGCTGAGTCACCTGAAGAAGAAGATCATAGCACTTGCTTCAAGAAAGAATTGATCTCAAAGATGTGGTTTGAATGGAATGAATATTGTGGTTACCGCGATTTTGAAGTGGAGACTGTTGACGTCAAAGTTTGTGGTGATTTATTCCTTGAAAGTTCTGCCTTAAGCGAAGATGTCAATGTTTTATATAAAAGGTTTGTGTTATAA 2655 39.44 GMYVRRNKRPKLADHGNDTLRIVSSAMADAAEQRRLRTSGNIIDYSSPFSIPDLLDCLDSGKYGSVTKEIEALMAKKMEILNPYISQYPVLSSMFLQVESRVKEAQNFINHQASRVTTNVIDLEDDSVPCKEMAAYHKSVIVIDSDDENCGNKKPPRLFQEVVLEKVSGELDYHAPLRHSDDGKVTKNGAAATHSFTHETNFVKDKGVYCGVEEEVDQGSERENDGLDDIWTEMNMALECSKVPSDAPVVSSLHQPENDDMEDCDHSFVLKDDIGYVCRICGVIDRGIETIFEFQYKVKKSSRTYMSESRNARYKDMDMGGVKWSEDDMTVTQICAHPRHMKQMKPHQIEGFNFLISNLVSENPGGCILAHAPGSGKTFMIISFMQSFLAKYPHARPLVVLPKGILATWKKEFQTWQVEDIPLLDFYSVKADSRSQQLVVLKKWVENRSILFLGYKQFSAIMSDSVSSVTSTSCQEILLKAPSILILDEGHTPRNENTDVLQTLAKVQTPRKVVLSGTLYQNHVKEVFNVLNLVRPKFTRSELSRPIIKRIMTRVDISGVRKNVKIGASASFYDLVEHTLQKDKDFRRKVAVIQDLREMTRNVLHYYKGDFLDELPGLVDFTVVLNLSPKQKHEVKQLKKLPRKFKVSSVGSSIYLHPKLKHFPEISTTTDEKMDEMLDNIDVKDGVKAKFFLTVLNLCEAAAEKLLVFSPYLVPLKFLERLAVKAKGWSQGREIFVISGESTSEQREFSMDRFNNSPDAKVFFGSIKACGEGISLVGASRIIVLDVHLNPSVTRQAIGRAFRPGQKKKVFAYRLVAAESPEEEDHSTCFKKELISKMWFEWNEYCGYRDFEVETVDVKVCGDLFLESSALSEDVNVLYKRFVL 884
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 22902641 22906772 + Bma007686.1 Bma12g00550 91976

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00550 884 CDD SF2_C_SNF 688 816 - -
Bma12g00550 884 Gene3D - 616 853 IPR027417 -
Bma12g00550 884 SMART ultradead3 340 548 IPR014001 -
Bma12g00550 884 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 694 854 IPR001650 -
Bma12g00550 884 Pfam Helicase conserved C-terminal domain 696 804 IPR001650 -
Bma12g00550 884 Pfam SNF2-related domain 362 634 IPR000330 GO:0005524|GO:0140658
Bma12g00550 884 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 482 843 IPR027417 -
Bma12g00550 884 Gene3D - 313 571 IPR038718 -
Bma12g00550 884 PANTHER PROTEIN CHROMATIN REMODELING 35 4 881 - -
Bma12g00550 884 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 4 881 IPR044567 GO:0080188
Bma12g00550 884 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 333 540 IPR027417 -
Bma12g00550 884 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 358 537 IPR014001 -
Bma12g00550 884 SMART helicmild6 717 805 IPR001650 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00550 K10875 RAD54L, RAD54; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-] - jre:108986999 1194.87
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g00550 Bma-Chr12:22902641 Bma05g00518 Bma-Chr5:25777111 3.11E-29 dispersed
Bma12g00550 Bma-Chr12:22902641 Bma07g00991 Bma-Chr7:38704716 1.58E-93 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g3 . Blo15g00679 Bda06g00991 . . . . Bma12g00550 . . Cma02g00375 Cma20g00824 Car02g00242 Car20g00710 Sed03g1723 . . Bhi05g01788 Tan02g2021 Cmetu03g0999 . . . . . . . . . . . Cone12ag1169 Cone8ag1217 . . Lsi10g00400 . Chy11g00351 . . Blo13g00542 . . . . . . Sed01g0278 Cmo02g00382 Cmo20g00835 . . . . Cpe16g00264 Cpe05g01280 Bhi10g01967 Tan05g1260 Cmetu11g0821 . . . . . . . . . . . . Csa02g01291 . Cme11g00153
Vvi3g510 . . Bda06g00949 . . . . Bma12g00550 . . . . . . . . Cpe15g00525 . . . . . . . . . . . . . . . . . . . . . Cme01g01480 . . . . . . . . . . . . . . Car19g00495 . . . . . . . . . . . . . . . . . . Chy01g00828 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004368 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 2 4 1 3 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58113 PF00176 SNF2_N 5.50E-21 CL0023 Bma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00550 Bma_Chr12 FPKM 0.0 0.0 0.864636 0.465589 0.802897 0.0 0.366788 0.450016 0.343382 0.299999