Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00554 ATGGATCAGCTGCTACAACCCGAAGCTTTCATTCAAACTACCCCTACGGCCTCAGCTCCGCCTCTCCCTGAGTTTAACGACCCTTCAAATCCATCTCATCCTAATTCAAGCCAAAAGCTTGAGGGAGAGCTGAAGGACACAGCGGCTGCAAGGAAAATTCAGAAGGCAGGCAGAGAAAAATTGAGGAGGGATAAACTAAATGAGCAGTTTATTGAGCTTGGACATGTCTTGGATCCTGATAGGCCTAAAAATGACAAAGCAACCATTCTTATGGATACCATCCAATTGCTGAAGGATCTGACATCTCAAGTTAATAAACTGAAAGCTGAATACACTACACTGACTGAAGAATCACATGAGTTGACTCAAGAAAAAAATGATCTTAGAGAAGAGAAGGCATCTCTTAGATCTGATATTGAGAATCTTAGTGCTCAGTATCAGCAGAGAGTGAGGAGTATGTTTCCTTGGCCGGCTATGGATCCCTCAGTCGTCATGGCTTCTCCCTCTTATCCTTTTCCAGTAGCGATGCCGATGCCTCCCGGGTCGATGCCGATGCATCCATCAATGCAGCCTTACTCCTTCTTCGGGAATCAAAATCCCTGTTCAACATTTGTCCCTTACATACCTTCTAATGCCTTGGTTGAACATCAGCCCATACCTCCATTTGTCCATCCAGGAAGCCAGCCTCGCAACTCTGGCAAACAAGATTCCAAGGGAGAAAGCAGGATTGAGAGAAGTCAAGGATCTAATGAAGTTACCACGGACCTTGAGTTGAAAACTCCAGGATCTACAGCAGAGCAGGGTTCATCGTTGGCACAAAGAAAATGTACGCAAACTCTGAGCCAGGAAAACAGTGCTGCAGAACCGAGTTCTTCGAGTAGATGTTCTTCGTCTCGTAGTATACAAAATAGCTCTTCTAACAGCATACCTGACGGTAGACAGGCTAAAGATGAACCAGAGAAGAAGACAAATAAAAAAAAGCAGGAATGA 990 44.75 MDQLLQPEAFIQTTPTASAPPLPEFNDPSNPSHPNSSQKLEGELKDTAAARKIQKAGREKLRRDKLNEQFIELGHVLDPDRPKNDKATILMDTIQLLKDLTSQVNKLKAEYTTLTEESHELTQEKNDLREEKASLRSDIENLSAQYQQRVRSMFPWPAMDPSVVMASPSYPFPVAMPMPPGSMPMHPSMQPYSFFGNQNPCSTFVPYIPSNALVEHQPIPPFVHPGSQPRNSGKQDSKGESRIERSQGSNEVTTDLELKTPGSTAEQGSSLAQRKCTQTLSQENSAAEPSSSSRCSSSRSIQNSSSNSIPDGRQAKDEPEKKTNKKKQE 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 23076784 23079601 - Bma007691.1 Bma12g00554 91980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00554 329 Coils Coil 90 145 - -
Bma12g00554 329 MobiDBLite consensus disorder prediction 246 312 - -
Bma12g00554 329 MobiDBLite consensus disorder prediction 1 20 - -
Bma12g00554 329 MobiDBLite consensus disorder prediction 313 329 - -
Bma12g00554 329 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 50 100 IPR011598 GO:0046983
Bma12g00554 329 MobiDBLite consensus disorder prediction 1 48 - -
Bma12g00554 329 PANTHER TRANSCRIPTION FACTOR BHLH121 24 315 - -
Bma12g00554 329 PANTHER TRANSCRIPTION FACTOR BHLH121 24 315 IPR044579 GO:0003700|GO:0055072
Bma12g00554 329 SMART finulus 56 106 IPR011598 GO:0046983
Bma12g00554 329 CDD bHLH_AtILR3_like 55 129 - -
Bma12g00554 329 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 49 120 IPR036638 GO:0046983
Bma12g00554 329 MobiDBLite consensus disorder prediction 218 329 - -
Bma12g00554 329 Gene3D - 49 129 IPR036638 GO:0046983
Bma12g00554 329 Pfam Helix-loop-helix DNA-binding domain 52 100 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00960 Bma-Chr3:10194011 Bma12g00554 Bma-Chr12:23076784 2.02E-59 dispersed
Bma05g00413 Bma-Chr5:12971497 Bma12g00554 Bma-Chr12:23076784 5.17E-115 dispersed
Bma12g00554 Bma-Chr12:23076784 Bma13g01026 Bma-Chr13:42866561 4.07E-20 dispersed
Bma12g00554 Bma-Chr12:23076784 Bma14g00357 Bma-Chr14:4355988 4.80E-21 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58114 PF00010 HLH 3.90E-07 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00554 - - tcc:18607610 360.533