Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00561 ATGTCTCAGCCTACGGCGCGACCTTCATTCTCCCCTCAACAACCTCCTTTTCATCCTCAGACATCATTTGATGGTGGAGGTGGTGTTCAAGTCCGGTGCGCCGGTTGCCGAAAGATCTTGACGCTTGCTCCCGGTGTCAAGGATTTTTTCTGTTCTACTTGTCAACTGCTTCAGATGTTACCTCCAGAGCTCTTGGGTAGGACCCACTCAAGACTCTCTCCTCCTCCTTCCTCACCACCACTGTCTTCACTGTTGTTACCATCTCCTTCTCTTCCCCCTCAGCATGTGCCGGCCCATGGCATCGATCCTACTAAAATCCAACTCCCTTGCGCTAATTGCAAAGCCATTCTCAATGTACCTCATGGTCTACTTAGATTCGCTTGTCCTCAGTGTGGGGTTGACCTGGCTGTTGATGTTTTCAAAGCCAAGCAGTTCTTTCAAGAGGAACTCAACGAGGTAGCCATTGAAGTGGAGCGTGAAGAAGATGAAGGGTGTATGATGGGTGAAACTTTTACAGATTATCGCCCCCAAAAACTATCCATAGGGTCACCCCATCCGGATCTTATTGTTGAGACATCCTCTCTATCTGCTGTGCAGCCACCCGATCCCACTTATAATCTTAAAGTACAAGATGACTTTGAAAGATCAAAGGCTTTGTCATGTCTTCAAATTGAAACACTGGTGTATACTAGTCAGAGACACCTCTACCACCTTCCTGATGGTACAAGGGCAGGATTCTTTATAGGAGATGGAGCTGGAGTTGGTAAAGGTCGGACAATTGCTGGGTTAATTTGGGAGAATTGGCACCATGGAAGGAGAAAAGCATTGTGGATCTCTATTGGTTCTGACTTGAAGTTTGATGCTAGAAGAGACTTAGATGACGTAGGTGCGACGAATGTTCAAGTTCATGCTTTGAACAAGCTGCCTTATTCTAAGCTTGATTCAAATCTTTTAAAGGTCAGAGAAGGGGTTGTATTTTTGACATATAACAGCCTCATAGCGTCTTCAGAGAAAGGTCGGTCACGAATGCAGCAGCTTGTACAATGGTGTGGATCAGGATTTGATGGCCTCATCATATTTGATGAGTGCCACAAAGCCAAAAACTTGGTACCTGAAACTGGGAATCAACCAACTCGAACCGGTGAAGCTGTTGTTGAGATTCAGGCTCGACTTCCTGAAGCTCGTGTTGTTTACTGCTCAGCTACTGGTGCGACTGAGCCACGCAATATGGGTTATATGGTACGACTTGGTCTTTGGGGCGCCAAAACATCATTCAGTGATTTTCGTGATTTTCTAGGGGCCCTGGATAAAGGTGGTGTTGGAGCTCTGGAACTTGTTGCCATGGATATGAAAGCAAGGGGTATGTATGTATGCCGCACGCTAAGCTACAGAGGAGTTGAGTTTGAAGTTATAGAAGCACCTTTAGAAGCTGAGATGATGGAAATGTACAAAAAGGCAGCAGAATTTTGGGTGGAGTTGCGGATGGAGTTACTATCTGCAAGTGCTTTTCTTAGTAATGACAGGCCTACTTCTAGTCAACTATGGCGATTGTATTGGGCAAGCCATCAACGTTTCTTCAGGCACATGTGTATATCTGCCAAAGTTCCTGCTACTGTTAGGTTAACTAAGCAAGCCTTGATGGATGGTAAATGTGTTGTCATTGGTCTTCAAAGCACTGGAGAGGCACGGACTGAGGAAGCTGTAACAAAATATGGTCTTGAACTGGATGATTTTGTTTCTGGACCTCGGGAACTGTTGCTAAAATTTGTGGAGGAATATTATCCTTTGCCTGAAAAGCCTGAAGCTCCTTCTGGAGAAGAAAGTGTCAAGGAGCTTCAGAGGAAGAGACACTCTGCTACTCCTGGGGTTTCAATGAAAGGGAGAGCAAGAAAGGTTGCAAAGTGGAAGCCTATTAGTGATGGTGAAAGTGATGAAGAATCAGAAAGTGATTCTGCCCAGGAATCAATGGAATCTGACGATGAATTTCAGATTTGTGAGATATGCAATTCTGAAGAGGAAAAAAAGAAACTGCTTCAGTGTTCCTGCTGTGGCCACCTTTTTCATCATGCCTGTGCAGTCCCTCCTATAATGGATGTAGTACCTGGAAATTGGTCATGCAATGCGTGCAAGGAGAAAACTGATGACTACATTCAAGCTAAAAATGCTTATGTAACTGAACTTTTGAAGAGGTATGAGGCAGCATCAGATCGGAAGTCTAAAGTTATGGAGATAATTCGGTCGCTGGCTCTTCCAAACAATCCTTTGGATGATATTATTGATCAGCTTGGAGGCCCTGATAAAGTAGCAGAAATGACCGGAAGAAGAGGCATGCTTGTAAGAGCCTCTAATGGAAAAGGGGTAACTTATCAGGCACGGAACACAAAGGATGTCACCATGGAAATGGTCAACATGCATGAAAAACAACTTTTTTTGGATGGTAAGAAGTTTATTGCCATCATTTCTGAAGCTGGATCAGCTGGAGTCTCATTGCAAGCAGACAAAAGAGTGGTAAATCAGAAAAGAAGAGTTCACTTGACTCTAGAACTTCCTTGGAGCGCTGACAGAGCAATCCAACAATTTGGAAGAACCCATAGGTCCAATCAAGCTTCTGCGCCAGAATACAGGCTACTATTTACTGATCTTGGTGGAGAACGTCGATTTGCATCTATTGTTGCAAAACGGTTAGAATCTCTTGGAGCCTTAACACAAGGAGATCGAAGGGCCGGACCCTCTTTGAGTGCTTACAATTTTGATAGTTCTTTTGGGAAGAGGGCATTGATGATGATGTATAAAGGAATTATGGAGCAGGAGCCTCTTCCTCTTGTACCCCCAGGATGCTCGAGTGACAAACCTACTACAATTCAGGATTTTATCACAAAAGCAAAGGCTTGTCTTGTGTCTGTAGGAATAGCTAGGCATTCAGTTTTGCCTAATGGGAGAGACGCTGGAAAGTCATGTTGTCGTATAGTTGATTCTGATATGAATGATGTTGGACGTTTTCTCAATCGGCTTTTAGGATTGCCACCTGAAATTCAAAATAGGATTTTTGAGTATTTCGTCAGCATCTTGGATCTTCTACTTCAGAATGCACGCATTGAAGGAAGCCTTGACTCAGGGATAGTTGACATGAAAGCTAACATTATTGAGTTACAAGGAAATCCGAAGACTGTTCATGTGGATCAGATGTCTGGTGCAACGACAGAGCTGTTTACATTCAATCTGGATCGTGGTGTCACTTGGGAGTCCTGCTGTACCATACTCGACGATAAGCAAAGAGACAGCCATGGTTCCACCTATGATGGATTCTATGAATCTAAGAGGGAGTGGATGGGGAGACATCATTTCATTTTAGCATTTGAAGGTTCTGTTCCTGAAATGTACAAAATAATCCGTCCTGCAGTTGGGGAGTCATTAAGGGAAATGCCTCTGGCTGAGTTGAAAACAAAATATCGGAAAATAACATCTTTAGAGAAAGCGCGTAGTGGCTGGGAAGATGAATATGGTGTTTCATCAAAACAGTGCATGCACGGCCCAAATTGTAAGCTGGGCAATTACTGTACTGTAGGCAGAAGAATACAGGAGGTTAATGTTTTGGGCGGCCTTATTCTTCCTGTTTGGAGCACCATTGAGAAGGCCCTTTCAAAGCAGGCTCGACAAAGCCACAGGAGGCTTCGTGTTGTGCGTATCGTAACAACTACTGATAATCAGAGAATCGTGGGACTTTTTGTGCCAAATGCGGCTGTTGAAGCTGTGCTCCAAGGTTTGTCTTCCTTCCCCTGA 3780 44.21 MSQPTARPSFSPQQPPFHPQTSFDGGGGVQVRCAGCRKILTLAPGVKDFFCSTCQLLQMLPPELLGRTHSRLSPPPSSPPLSSLLLPSPSLPPQHVPAHGIDPTKIQLPCANCKAILNVPHGLLRFACPQCGVDLAVDVFKAKQFFQEELNEVAIEVEREEDEGCMMGETFTDYRPQKLSIGSPHPDLIVETSSLSAVQPPDPTYNLKVQDDFERSKALSCLQIETLVYTSQRHLYHLPDGTRAGFFIGDGAGVGKGRTIAGLIWENWHHGRRKALWISIGSDLKFDARRDLDDVGATNVQVHALNKLPYSKLDSNLLKVREGVVFLTYNSLIASSEKGRSRMQQLVQWCGSGFDGLIIFDECHKAKNLVPETGNQPTRTGEAVVEIQARLPEARVVYCSATGATEPRNMGYMVRLGLWGAKTSFSDFRDFLGALDKGGVGALELVAMDMKARGMYVCRTLSYRGVEFEVIEAPLEAEMMEMYKKAAEFWVELRMELLSASAFLSNDRPTSSQLWRLYWASHQRFFRHMCISAKVPATVRLTKQALMDGKCVVIGLQSTGEARTEEAVTKYGLELDDFVSGPRELLLKFVEEYYPLPEKPEAPSGEESVKELQRKRHSATPGVSMKGRARKVAKWKPISDGESDEESESDSAQESMESDDEFQICEICNSEEEKKKLLQCSCCGHLFHHACAVPPIMDVVPGNWSCNACKEKTDDYIQAKNAYVTELLKRYEAASDRKSKVMEIIRSLALPNNPLDDIIDQLGGPDKVAEMTGRRGMLVRASNGKGVTYQARNTKDVTMEMVNMHEKQLFLDGKKFIAIISEAGSAGVSLQADKRVVNQKRRVHLTLELPWSADRAIQQFGRTHRSNQASAPEYRLLFTDLGGERRFASIVAKRLESLGALTQGDRRAGPSLSAYNFDSSFGKRALMMMYKGIMEQEPLPLVPPGCSSDKPTTIQDFITKAKACLVSVGIARHSVLPNGRDAGKSCCRIVDSDMNDVGRFLNRLLGLPPEIQNRIFEYFVSILDLLLQNARIEGSLDSGIVDMKANIIELQGNPKTVHVDQMSGATTELFTFNLDRGVTWESCCTILDDKQRDSHGSTYDGFYESKREWMGRHHFILAFEGSVPEMYKIIRPAVGESLREMPLAELKTKYRKITSLEKARSGWEDEYGVSSKQCMHGPNCKLGNYCTVGRRIQEVNVLGGLILPVWSTIEKALSKQARQSHRRLRVVRIVTTTDNQRIVGLFVPNAAVEAVLQGLSSFP 1259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 23995634 24037829 - Bma007706.1 Bma12g00561 91987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00561 1259 Pfam C-terminal domain on Strawberry notch homologue 753 1042 IPR026937 -
Bma12g00561 1259 Gene3D - 223 414 IPR027417 -
Bma12g00561 1259 Pfam PHD-finger 664 712 IPR019787 -
Bma12g00561 1259 ProSitePatterns Zinc finger PHD-type signature. 665 709 IPR019786 -
Bma12g00561 1259 SMART PHD_3 664 710 IPR001965 -
Bma12g00561 1259 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 30 55 IPR005735 -
Bma12g00561 1259 Coils Coil 143 163 - -
Bma12g00561 1259 MobiDBLite consensus disorder prediction 1 23 - -
Bma12g00561 1259 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 808 914 IPR027417 -
Bma12g00561 1259 ProSiteProfiles Zinc finger PHD-type profile. 662 712 IPR019787 -
Bma12g00561 1259 SUPERFAMILY FYVE/PHD zinc finger 657 714 IPR011011 -
Bma12g00561 1259 Pfam P-loop containing NTP hydrolase pore-1 184 484 IPR039187 -
Bma12g00561 1259 PANTHER OS08G0223700 PROTEIN 148 1256 - -
Bma12g00561 1259 PANTHER OS08G0223700 PROTEIN 28 146 - -
Bma12g00561 1259 MobiDBLite consensus disorder prediction 643 658 - -
Bma12g00561 1259 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 201 427 IPR027417 -
Bma12g00561 1259 MobiDBLite consensus disorder prediction 599 658 - -
Bma12g00561 1259 MobiDBLite consensus disorder prediction 73 89 - -
Bma12g00561 1259 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 628 716 IPR013083 -
Bma12g00561 1259 PANTHER STRAWBERRY NOTCH-RELATED 148 1256 IPR026741 GO:0006355
Bma12g00561 1259 PANTHER STRAWBERRY NOTCH-RELATED 28 146 IPR026741 GO:0006355
Bma12g00561 1259 ProSiteProfiles Zinc finger RING-type profile. 665 710 IPR001841 -
Bma12g00561 1259 MobiDBLite consensus disorder prediction 67 89 - -
Bma12g00561 1259 MobiDBLite consensus disorder prediction 603 617 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58115 PF13872 AAA_34 4.00E-131 CL0023 Bma TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00561 - - jre:109003459 2028.45