Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00561 ATGTCTCAGCCTACGGCGCGACCTTCATTCTCCCCTCAACAACCTCCTTTTCATCCTCAGACATCATTTGATGGTGGAGGTGGTGTTCAAGTCCGGTGCGCCGGTTGCCGAAAGATCTTGACGCTTGCTCCCGGTGTCAAGGATTTTTTCTGTTCTACTTGTCAACTGCTTCAGATGTTACCTCCAGAGCTCTTGGGTAGGACCCACTCAAGACTCTCTCCTCCTCCTTCCTCACCACCACTGTCTTCACTGTTGTTACCATCTCCTTCTCTTCCCCCTCAGCATGTGCCGGCCCATGGCATCGATCCTACTAAAATCCAACTCCCTTGCGCTAATTGCAAAGCCATTCTCAATGTACCTCATGGTCTACTTAGATTCGCTTGTCCTCAGTGTGGGGTTGACCTGGCTGTTGATGTTTTCAAAGCCAAGCAGTTCTTTCAAGAGGAACTCAACGAGGTAGCCATTGAAGTGGAGCGTGAAGAAGATGAAGGGTGTATGATGGGTGAAACTTTTACAGATTATCGCCCCCAAAAACTATCCATAGGGTCACCCCATCCGGATCTTATTGTTGAGACATCCTCTCTATCTGCTGTGCAGCCACCCGATCCCACTTATAATCTTAAAGTACAAGATGACTTTGAAAGATCAAAGGCTTTGTCATGTCTTCAAATTGAAACACTGGTGTATACTAGTCAGAGACACCTCTACCACCTTCCTGATGGTACAAGGGCAGGATTCTTTATAGGAGATGGAGCTGGAGTTGGTAAAGGTCGGACAATTGCTGGGTTAATTTGGGAGAATTGGCACCATGGAAGGAGAAAAGCATTGTGGATCTCTATTGGTTCTGACTTGAAGTTTGATGCTAGAAGAGACTTAGATGACGTAGGTGCGACGAATGTTCAAGTTCATGCTTTGAACAAGCTGCCTTATTCTAAGCTTGATTCAAATCTTTTAAAGGTCAGAGAAGGGGTTGTATTTTTGACATATAACAGCCTCATAGCGTCTTCAGAGAAAGGTCGGTCACGAATGCAGCAGCTTGTACAATGGTGTGGATCAGGATTTGATGGCCTCATCATATTTGATGAGTGCCACAAAGCCAAAAACTTGGTACCTGAAACTGGGAATCAACCAACTCGAACCGGTGAAGCTGTTGTTGAGATTCAGGCTCGACTTCCTGAAGCTCGTGTTGTTTACTGCTCAGCTACTGGTGCGACTGAGCCACGCAATATGGGTTATATGGTACGACTTGGTCTTTGGGGCGCCAAAACATCATTCAGTGATTTTCGTGATTTTCTAGGGGCCCTGGATAAAGGTGGTGTTGGAGCTCTGGAACTTGTTGCCATGGATATGAAAGCAAGGGGTATGTATGTATGCCGCACGCTAAGCTACAGAGGAGTTGAGTTTGAAGTTATAGAAGCACCTTTAGAAGCTGAGATGATGGAAATGTACAAAAAGGCAGCAGAATTTTGGGTGGAGTTGCGGATGGAGTTACTATCTGCAAGTGCTTTTCTTAGTAATGACAGGCCTACTTCTAGTCAACTATGGCGATTGTATTGGGCAAGCCATCAACGTTTCTTCAGGCACATGTGTATATCTGCCAAAGTTCCTGCTACTGTTAGGTTAACTAAGCAAGCCTTGATGGATGGTAAATGTGTTGTCATTGGTCTTCAAAGCACTGGAGAGGCACGGACTGAGGAAGCTGTAACAAAATATGGTCTTGAACTGGATGATTTTGTTTCTGGACCTCGGGAACTGTTGCTAAAATTTGTGGAGGAATATTATCCTTTGCCTGAAAAGCCTGAAGCTCCTTCTGGAGAAGAAAGTGTCAAGGAGCTTCAGAGGAAGAGACACTCTGCTACTCCTGGGGTTTCAATGAAAGGGAGAGCAAGAAAGGTTGCAAAGTGGAAGCCTATTAGTGATGGTGAAAGTGATGAAGAATCAGAAAGTGATTCTGCCCAGGAATCAATGGAATCTGACGATGAATTTCAGATTTGTGAGATATGCAATTCTGAAGAGGAAAAAAAGAAACTGCTTCAGTGTTCCTGCTGTGGCCACCTTTTTCATCATGCCTGTGCAGTCCCTCCTATAATGGATGTAGTACCTGGAAATTGGTCATGCAATGCGTGCAAGGAGAAAACTGATGACTACATTCAAGCTAAAAATGCTTATGTAACTGAACTTTTGAAGAGGTATGAGGCAGCATCAGATCGGAAGTCTAAAGTTATGGAGATAATTCGGTCGCTGGCTCTTCCAAACAATCCTTTGGATGATATTATTGATCAGCTTGGAGGCCCTGATAAAGTAGCAGAAATGACCGGAAGAAGAGGCATGCTTGTAAGAGCCTCTAATGGAAAAGGGGTAACTTATCAGGCACGGAACACAAAGGATGTCACCATGGAAATGGTCAACATGCATGAAAAACAACTTTTTTTGGATGGTAAGAAGTTTATTGCCATCATTTCTGAAGCTGGATCAGCTGGAGTCTCATTGCAAGCAGACAAAAGAGTGGTAAATCAGAAAAGAAGAGTTCACTTGACTCTAGAACTTCCTTGGAGCGCTGACAGAGCAATCCAACAATTTGGAAGAACCCATAGGTCCAATCAAGCTTCTGCGCCAGAATACAGGCTACTATTTACTGATCTTGGTGGAGAACGTCGATTTGCATCTATTGTTGCAAAACGGTTAGAATCTCTTGGAGCCTTAACACAAGGAGATCGAAGGGCCGGACCCTCTTTGAGTGCTTACAATTTTGATAGTTCTTTTGGGAAGAGGGCATTGATGATGATGTATAAAGGAATTATGGAGCAGGAGCCTCTTCCTCTTGTACCCCCAGGATGCTCGAGTGACAAACCTACTACAATTCAGGATTTTATCACAAAAGCAAAGGCTTGTCTTGTGTCTGTAGGAATAGCTAGGCATTCAGTTTTGCCTAATGGGAGAGACGCTGGAAAGTCATGTTGTCGTATAGTTGATTCTGATATGAATGATGTTGGACGTTTTCTCAATCGGCTTTTAGGATTGCCACCTGAAATTCAAAATAGGATTTTTGAGTATTTCGTCAGCATCTTGGATCTTCTACTTCAGAATGCACGCATTGAAGGAAGCCTTGACTCAGGGATAGTTGACATGAAAGCTAACATTATTGAGTTACAAGGAAATCCGAAGACTGTTCATGTGGATCAGATGTCTGGTGCAACGACAGAGCTGTTTACATTCAATCTGGATCGTGGTGTCACTTGGGAGTCCTGCTGTACCATACTCGACGATAAGCAAAGAGACAGCCATGGTTCCACCTATGATGGATTCTATGAATCTAAGAGGGAGTGGATGGGGAGACATCATTTCATTTTAGCATTTGAAGGTTCTGTTCCTGAAATGTACAAAATAATCCGTCCTGCAGTTGGGGAGTCATTAAGGGAAATGCCTCTGGCTGAGTTGAAAACAAAATATCGGAAAATAACATCTTTAGAGAAAGCGCGTAGTGGCTGGGAAGATGAATATGGTGTTTCATCAAAACAGTGCATGCACGGCCCAAATTGTAAGCTGGGCAATTACTGTACTGTAGGCAGAAGAATACAGGAGGTTAATGTTTTGGGCGGCCTTATTCTTCCTGTTTGGAGCACCATTGAGAAGGCCCTTTCAAAGCAGGCTCGACAAAGCCACAGGAGGCTTCGTGTTGTGCGTATCGTAACAACTACTGATAATCAGAGAATCGTGGGACTTTTTGTGCCAAATGCGGCTGTTGAAGCTGTGCTCCAAGGTTTGTCTTCCTTCCCCTGA 3780 44.21 MSQPTARPSFSPQQPPFHPQTSFDGGGGVQVRCAGCRKILTLAPGVKDFFCSTCQLLQMLPPELLGRTHSRLSPPPSSPPLSSLLLPSPSLPPQHVPAHGIDPTKIQLPCANCKAILNVPHGLLRFACPQCGVDLAVDVFKAKQFFQEELNEVAIEVEREEDEGCMMGETFTDYRPQKLSIGSPHPDLIVETSSLSAVQPPDPTYNLKVQDDFERSKALSCLQIETLVYTSQRHLYHLPDGTRAGFFIGDGAGVGKGRTIAGLIWENWHHGRRKALWISIGSDLKFDARRDLDDVGATNVQVHALNKLPYSKLDSNLLKVREGVVFLTYNSLIASSEKGRSRMQQLVQWCGSGFDGLIIFDECHKAKNLVPETGNQPTRTGEAVVEIQARLPEARVVYCSATGATEPRNMGYMVRLGLWGAKTSFSDFRDFLGALDKGGVGALELVAMDMKARGMYVCRTLSYRGVEFEVIEAPLEAEMMEMYKKAAEFWVELRMELLSASAFLSNDRPTSSQLWRLYWASHQRFFRHMCISAKVPATVRLTKQALMDGKCVVIGLQSTGEARTEEAVTKYGLELDDFVSGPRELLLKFVEEYYPLPEKPEAPSGEESVKELQRKRHSATPGVSMKGRARKVAKWKPISDGESDEESESDSAQESMESDDEFQICEICNSEEEKKKLLQCSCCGHLFHHACAVPPIMDVVPGNWSCNACKEKTDDYIQAKNAYVTELLKRYEAASDRKSKVMEIIRSLALPNNPLDDIIDQLGGPDKVAEMTGRRGMLVRASNGKGVTYQARNTKDVTMEMVNMHEKQLFLDGKKFIAIISEAGSAGVSLQADKRVVNQKRRVHLTLELPWSADRAIQQFGRTHRSNQASAPEYRLLFTDLGGERRFASIVAKRLESLGALTQGDRRAGPSLSAYNFDSSFGKRALMMMYKGIMEQEPLPLVPPGCSSDKPTTIQDFITKAKACLVSVGIARHSVLPNGRDAGKSCCRIVDSDMNDVGRFLNRLLGLPPEIQNRIFEYFVSILDLLLQNARIEGSLDSGIVDMKANIIELQGNPKTVHVDQMSGATTELFTFNLDRGVTWESCCTILDDKQRDSHGSTYDGFYESKREWMGRHHFILAFEGSVPEMYKIIRPAVGESLREMPLAELKTKYRKITSLEKARSGWEDEYGVSSKQCMHGPNCKLGNYCTVGRRIQEVNVLGGLILPVWSTIEKALSKQARQSHRRLRVVRIVTTTDNQRIVGLFVPNAAVEAVLQGLSSFP 1259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 23995634 24037829 - Bma007706.1 Bma12g00561 91987

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00561 1259 Pfam C-terminal domain on Strawberry notch homologue 753 1042 IPR026937 -
Bma12g00561 1259 Gene3D - 223 414 IPR027417 -
Bma12g00561 1259 Pfam PHD-finger 664 712 IPR019787 -
Bma12g00561 1259 ProSitePatterns Zinc finger PHD-type signature. 665 709 IPR019786 -
Bma12g00561 1259 SMART PHD_3 664 710 IPR001965 -
Bma12g00561 1259 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 30 55 IPR005735 -
Bma12g00561 1259 Coils Coil 143 163 - -
Bma12g00561 1259 MobiDBLite consensus disorder prediction 1 23 - -
Bma12g00561 1259 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 808 914 IPR027417 -
Bma12g00561 1259 ProSiteProfiles Zinc finger PHD-type profile. 662 712 IPR019787 -
Bma12g00561 1259 SUPERFAMILY FYVE/PHD zinc finger 657 714 IPR011011 -
Bma12g00561 1259 Pfam P-loop containing NTP hydrolase pore-1 184 484 IPR039187 -
Bma12g00561 1259 PANTHER OS08G0223700 PROTEIN 148 1256 - -
Bma12g00561 1259 PANTHER OS08G0223700 PROTEIN 28 146 - -
Bma12g00561 1259 MobiDBLite consensus disorder prediction 643 658 - -
Bma12g00561 1259 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 201 427 IPR027417 -
Bma12g00561 1259 MobiDBLite consensus disorder prediction 599 658 - -
Bma12g00561 1259 MobiDBLite consensus disorder prediction 73 89 - -
Bma12g00561 1259 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 628 716 IPR013083 -
Bma12g00561 1259 PANTHER STRAWBERRY NOTCH-RELATED 148 1256 IPR026741 GO:0006355
Bma12g00561 1259 PANTHER STRAWBERRY NOTCH-RELATED 28 146 IPR026741 GO:0006355
Bma12g00561 1259 ProSiteProfiles Zinc finger RING-type profile. 665 710 IPR001841 -
Bma12g00561 1259 MobiDBLite consensus disorder prediction 67 89 - -
Bma12g00561 1259 MobiDBLite consensus disorder prediction 603 617 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00561 - - - jre:109003459 2028.45
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1181 . . . . Bpe07g00481 . . . . . . . . . . . . . . . . . . . Cla02g01841 Cam02g1947 Cec02g1974 Cco02g2013 Clacu02g1928 Cmu02g1877 Cre02g2189 . . . . . . . Cme11g01655 . . . . . . . Bma12g00561 . . . . . . . . Cpe05g01023 Bhi10g00921 . . . . . . . . . . . . . . Csa06g01139 Chy11g01053 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008454 1 4 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58115 PF13872 AAA_34 4.00E-131 CL0023 Bma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00561 Bma_Chr12 FPKM 8.12253 10.775889 14.779329 13.984045 10.419012 9.795523 11.26181 3.461342 3.8364 4.242197