Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00569 ATGTTCCAGCAGGTCAAGAAGGCCTCCCCTATGAATTCCCATGAGAGACCCATCTGCCTTCAAGGGGACTCTGGTCTGGTCCTCACCACTGACCCCAAGCCCCGTCTCCGATGGACTTCCGAGCTCCACGAGCGCTTTGTCGATGCCGTCACTCAGCTTGGCGGTCCAGATAAGGCCACTCCAAAGACAATCATGAGGGTCATGGGTGTGAAGGGTCTTACTCTTTACCACCTCAAGAGCCACCTTCAGAAATACAGGCTTGGAAAGCAACCGCATAAGGAATTCAACGATCACTCAATCAAGGATGGAATGAGAGCTGCGGCTTTAGATCTTCAACGAAACATTTCATCTTCTTCCAGCATGATGGAACGCAGCATGAATGACAGTAACTCACACACGGTTGATGCAATTAGGACGCAAATGGAGGTACAGAGAAGATTACAGGAGCAGCTAGAGGTTCAGAAACACCTTCAGCTGAGGATTGAAGCGCAAGGGAAGTACATGCAAAGCATACTGGAGAAGGCATGTCAAACCCTCGCCGGGGAAAACAGTACGAGTAATGCAGCTGTGCCGTTCAAGACAGCAAGAAATAACAATGCTAGTCCAAGTCCAGATCATGCTATTCCCCCCTTTAAGTTCGCATGCTTTGGAGACGCTGGTAATATCAGCGGCGGCGATAATGGTAGCGACCAAATTGACCATCTTCGTCAGAACATCGAAAAATGCAACAACGAGAGTGGTTTCATGTCGAGCAGTGGCAACTACTTGTGCTCGGAGAAGAAGAAGCCTGGCTCTTATGGAAAGAGCCCATTCATCTGGTGTGATGATATCCGACTGCAAGATAGCACTTTCAATTCAGATTGCTGCGCCAACATCATCCGTTGA 885 49.04 MFQQVKKASPMNSHERPICLQGDSGLVLTTDPKPRLRWTSELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKYRLGKQPHKEFNDHSIKDGMRAAALDLQRNISSSSSMMERSMNDSNSHTVDAIRTQMEVQRRLQEQLEVQKHLQLRIEAQGKYMQSILEKACQTLAGENSTSNAAVPFKTARNNNASPSPDHAIPPFKFACFGDAGNISGGDNGSDQIDHLRQNIEKCNNESGFMSSSGNYLCSEKKKPGSYGKSPFIWCDDIRLQDSTFNSDCCANIIR 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 24779078 24780477 - Bma007726.1 Bma12g00569 91995

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00569 294 PANTHER MYB FAMILY TRANSCRIPTION FACTOR APL 1 282 - -
Bma12g00569 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 90 IPR017930 -
Bma12g00569 294 SUPERFAMILY Homeodomain-like 32 88 IPR009057 -
Bma12g00569 294 Gene3D - 32 90 - -
Bma12g00569 294 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 1 282 IPR044848 GO:0003700
Bma12g00569 294 Pfam MYB-CC type transfactor, LHEQLE motif 135 178 IPR025756 -
Bma12g00569 294 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 33 88 IPR006447 GO:0003677
Bma12g00569 294 Pfam Myb-like DNA-binding domain 36 86 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00569 - - - cpap:110817235 359.762
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma08g00825 Bma12g00569 CCT
Bma03g00488 Bma12g00569 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00488 Bma-Chr3:3841540 Bma12g00569 Bma-Chr12:24779078 1.35E-62 dispersed
Bma06g01283 Bma-Chr6:49912101 Bma12g00569 Bma-Chr12:24779078 6.86E-66 dispersed
Bma10g00012 Bma-Chr10:220723 Bma12g00569 Bma-Chr12:24779078 7.69E-58 dispersed
Bma11g00043 Bma-Chr11:576963 Bma12g00569 Bma-Chr12:24779078 2.12E-51 dispersed
Bma14g01649 Bma-Chr14:34968952 Bma12g00569 Bma-Chr12:24779078 3.66E-44 dispersed
Bma12g00569 Bma-Chr12:24779078 Bma12g00572 Bma-Chr12:24868502 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1171 Blo04g00455 Blo13g00605 . . Bpe07g00477 . Bma08g00825 . . . . . . . . . . Bhi05g01981 Tan02g0015 Cmetu01g1460 Lac12g0030 . . . Cla02g01833 Cam02g1942 Cec02g1969 Cco02g2008 Clacu02g1922 Cmu02g1871 Cre02g2184 . . . . . Csa07g01218 . Cme11g01645 Blo15g00640 . . . Bpe15g00926 . Bma03g00488 Bma12g00569 Sed01g0770 . . . . . . Cpe15g00910 Cpe05g01028 Bhi10g00928 Tan05g0578 Cmetu11g1511 . Hepe08g0654 . . . . . . . . . . Csa06g01145 Chy11g01047 Cme01g01493
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma06g01283 BCT 12 312 G2-like Transcription Factor Family AT3G24120 54.8 1.9e-74 276.2
Bma02g01204 BCT 12 263 G2-like Transcription Factor Family AT3G24120 57.4 6.5e-67 251.1
Bma12g00569 BCT,CCT 20 185 G2-like Transcription Factor Family AT3G24120 58.0 4.7e-41 165.2
Bma12g00572 . 20 185 G2-like Transcription Factor Family AT3G24120 58.0 4.7e-41 165.2
Bma11g00043 . 13 146 G2-like Transcription Factor Family AT3G24120 60.4 5.4e-37 151.8
Bma01g00775 . 1 184 G2-like Transcription Factor Family AT5G42630 54.8 1.4e-37 153.3
Bma06g00768 CCT 1 256 G2-like Transcription Factor Family AT1G25550 52.6 1.3e-58 223.4
Bma14g01699 CCT 19 251 G2-like Transcription Factor Family AT1G25550 56.9 5.0e-53 204.9
Bma14g01699 CCT 19 305 G2-like Transcription Factor Family AT1G68670 51.6 1.2e-64 243.8
Bma14g01699 CCT 19 251 G2-like Transcription Factor Family AT3G25790 54.9 1.5e-43 173.3
Bma06g00768 CCT 19 298 G2-like Transcription Factor Family AT1G13300 51.2 2.0e-59 226.5
Bma14g01699 CCT 19 294 G2-like Transcription Factor Family AT1G13300 50.2 4.9e-58 221.9
Bma07g00088 . 1 269 G2-like Transcription Factor Family AT3G46640 52.4 4.3e-64 241.9
Bma01g02700 . 1 306 G2-like Transcription Factor Family AT5G05090 53.9 9.2e-73 270.4
Bma05g01331 . 1 309 G2-like Transcription Factor Family AT5G05090 51.9 2.5e-70 262.3
Bma14g01215 . 6 147 G2-like Transcription Factor Family AT5G29000 54.4 1.1e-37 154.1
Bma06g01283 BCT 12 312 G2-like Transcription Factor Family AT4G13640 53.5 6.9e-61 231.1
Bma02g01204 BCT 12 310 G2-like Transcription Factor Family AT4G13640 53.2 1.1e-55 213.8
Bma09g00485 BCT 130 376 G2-like Transcription Factor Family AT3G04450 53.0 4.4e-50 195.7
Bma06g01283 BCT 12 312 G2-like Transcription Factor Family AT3G24120 54.8 1.9e-74 276.2
Bma02g01204 BCT 12 263 G2-like Transcription Factor Family AT3G24120 57.4 6.5e-67 251.1
Bma12g00569 BCT,CCT 20 185 G2-like Transcription Factor Family AT3G24120 58.0 4.7e-41 165.2
Bma12g00572 . 20 185 G2-like Transcription Factor Family AT3G24120 58.0 4.7e-41 165.2
Bma11g00043 . 13 146 G2-like Transcription Factor Family AT3G24120 60.4 5.4e-37 151.8
Bma12g00569 BCT,CCT 1 275 G2-like Transcription Factor Family AT1G79430 58.3 3.3e-65 245.7
Bma12g00572 . 1 275 G2-like Transcription Factor Family AT1G79430 57.9 7.3e-65 244.6
Bma08g00825 BCT,CCT 1 189 G2-like Transcription Factor Family AT1G79430 59.1 2.9e-53 206.1
Bma06g01283 BCT 36 200 G2-like Transcription Factor Family AT1G79430 61.4 6.9e-39 158.3
Bma02g01204 BCT 36 202 G2-like Transcription Factor Family AT1G79430 61.5 1.1e-36 151.0
Bma01g02700 . 1 306 G2-like Transcription Factor Family AT3G10760 65.1 2.2e-95 345.9
Bma05g01331 . 1 309 G2-like Transcription Factor Family AT3G10760 64.6 1.9e-91 332.8
Bma01g02700 . 1 208 G2-like Transcription Factor Family AT2G40970 64.0 1.9e-64 242.7
Bma05g01331 . 1 207 G2-like Transcription Factor Family AT2G40970 62.7 1.4e-62 236.5
Bma13g00423 . 91 323 G2-like Transcription Factor Family AT4G28610 51.0 2.0e-50 196.8
Bma14g01215 . 4 225 G2-like Transcription Factor Family AT4G28610 50.4 1.5e-42 170.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001069 3 4 3 4 3 2 4 2 2 2 2 2 4 2 2 4 2 3 3 2 2 2 2 2 2 2 1 6 5 2 81
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58116 PF00249 Myb_DNA-binding 1.20E-07 CL0123 Bma TF