Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00572 ATGTTCCAGCAGGTCAAGAAGGCCTCCCCTATGAATTCCCATGAGAGACCCATCTGCCTTCAAGGGGACTCTGGTCTGGTCCTCACCACTGACCCCAAGCCCCGTCTCCGATGGACTTCCGAGCTCCACGAGCGCTTTGTCGATGCCGTCACTCAGCTTGGCGGTCCAGATAAGGCCACTCCAAAGACAATCATGAGGGTCATGGGTGTGAAGGGTCTTACTCTTTACCACCTCAAGAGCCACCTTCAGAAATACAGGCTTGGAAAGCAACCGCATAAGGAATTCAACGATCACTCAATCAAGGATGGAATGAGAGCTGCGGCTTTAGATCTTCAACGAAACATTTCATCTTCTTCCAGCATGATGGAACGCAGCATGAATGACAGTAACTCACACACGGTTGATGCAATTAGGACGCAAATGGAGGTACAGAGAAGATTACAGGAGCAGCTAGAGGTTCAGAAACACCTTCAGCTGAGGATTGAAGCGCAAGGGAAGTACATGCAAAGCATACTGGAGAAGGCATGTCAAACCCTCGCCGGGGAAAACAGTACGAGTAATGCAGCTGTGCCGTTCAAGACAGCAAGAAATAACAATGCTAGTCCAAGTCCAGATCATGCTATTCCCCCTTTTAAGTTCGCATGCTTTGGAGACGCTGGTAATATCAGCGGCGGCGATAATGGTAGCGACCAAATTGACCATCTTCGTCAGAACATGGAAAAATGCAACAACGAGAGTGGTTTCATGTCGAGCAGTGGCAACTACTTGTGCTCGGAGAAGAAGAAGCCTGGCTCTTATGGAAAGAGCCCATTCATCTGGTGTGATGACATCCGACTGCAAGATAGCACTTTCAATTCAGATTGCTGCGCCAACATCATCCGTTGA 885 49.04 MFQQVKKASPMNSHERPICLQGDSGLVLTTDPKPRLRWTSELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKYRLGKQPHKEFNDHSIKDGMRAAALDLQRNISSSSSMMERSMNDSNSHTVDAIRTQMEVQRRLQEQLEVQKHLQLRIEAQGKYMQSILEKACQTLAGENSTSNAAVPFKTARNNNASPSPDHAIPPFKFACFGDAGNISGGDNGSDQIDHLRQNMEKCNNESGFMSSSGNYLCSEKKKPGSYGKSPFIWCDDIRLQDSTFNSDCCANIIR 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 24868502 24869902 - Bma007730.1 Bma12g00572 91998

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00572 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 90 IPR017930 -
Bma12g00572 294 SUPERFAMILY Homeodomain-like 32 88 IPR009057 -
Bma12g00572 294 Gene3D - 32 90 - -
Bma12g00572 294 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 1 282 IPR044848 GO:0003700
Bma12g00572 294 Pfam MYB-CC type transfactor, LHEQLE motif 135 178 IPR025756 -
Bma12g00572 294 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 33 88 IPR006447 GO:0003677
Bma12g00572 294 PANTHER MYB FAMILY TRANSCRIPTION FACTOR APL 1 282 - -
Bma12g00572 294 Pfam Myb-like DNA-binding domain 36 86 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00572 - - - cpap:110817235 361.303
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00825 Bma-Chr8:46047913 Bma12g00572 Bma-Chr12:24868502 7.04E-78 dispersed
Bma12g00569 Bma-Chr12:24779078 Bma12g00572 Bma-Chr12:24868502 0 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma06g01283 BCT 12 312 G2-like Transcription Factor Family AT3G24120 54.8 1.9e-74 276.2
Bma02g01204 BCT 12 263 G2-like Transcription Factor Family AT3G24120 57.4 6.5e-67 251.1
Bma12g00569 BCT,CCT 20 185 G2-like Transcription Factor Family AT3G24120 58.0 4.7e-41 165.2
Bma12g00572 . 20 185 G2-like Transcription Factor Family AT3G24120 58.0 4.7e-41 165.2
Bma11g00043 . 13 146 G2-like Transcription Factor Family AT3G24120 60.4 5.4e-37 151.8
Bma01g00775 . 1 184 G2-like Transcription Factor Family AT5G42630 54.8 1.4e-37 153.3
Bma06g00768 CCT 1 256 G2-like Transcription Factor Family AT1G25550 52.6 1.3e-58 223.4
Bma14g01699 CCT 19 251 G2-like Transcription Factor Family AT1G25550 56.9 5.0e-53 204.9
Bma14g01699 CCT 19 305 G2-like Transcription Factor Family AT1G68670 51.6 1.2e-64 243.8
Bma14g01699 CCT 19 251 G2-like Transcription Factor Family AT3G25790 54.9 1.5e-43 173.3
Bma06g00768 CCT 19 298 G2-like Transcription Factor Family AT1G13300 51.2 2.0e-59 226.5
Bma14g01699 CCT 19 294 G2-like Transcription Factor Family AT1G13300 50.2 4.9e-58 221.9
Bma07g00088 . 1 269 G2-like Transcription Factor Family AT3G46640 52.4 4.3e-64 241.9
Bma01g02700 . 1 306 G2-like Transcription Factor Family AT5G05090 53.9 9.2e-73 270.4
Bma05g01331 . 1 309 G2-like Transcription Factor Family AT5G05090 51.9 2.5e-70 262.3
Bma14g01215 . 6 147 G2-like Transcription Factor Family AT5G29000 54.4 1.1e-37 154.1
Bma06g01283 BCT 12 312 G2-like Transcription Factor Family AT4G13640 53.5 6.9e-61 231.1
Bma02g01204 BCT 12 310 G2-like Transcription Factor Family AT4G13640 53.2 1.1e-55 213.8
Bma09g00485 BCT 130 376 G2-like Transcription Factor Family AT3G04450 53.0 4.4e-50 195.7
Bma06g01283 BCT 12 312 G2-like Transcription Factor Family AT3G24120 54.8 1.9e-74 276.2
Bma02g01204 BCT 12 263 G2-like Transcription Factor Family AT3G24120 57.4 6.5e-67 251.1
Bma12g00569 BCT,CCT 20 185 G2-like Transcription Factor Family AT3G24120 58.0 4.7e-41 165.2
Bma12g00572 . 20 185 G2-like Transcription Factor Family AT3G24120 58.0 4.7e-41 165.2
Bma11g00043 . 13 146 G2-like Transcription Factor Family AT3G24120 60.4 5.4e-37 151.8
Bma12g00569 BCT,CCT 1 275 G2-like Transcription Factor Family AT1G79430 58.3 3.3e-65 245.7
Bma12g00572 . 1 275 G2-like Transcription Factor Family AT1G79430 57.9 7.3e-65 244.6
Bma08g00825 BCT,CCT 1 189 G2-like Transcription Factor Family AT1G79430 59.1 2.9e-53 206.1
Bma06g01283 BCT 36 200 G2-like Transcription Factor Family AT1G79430 61.4 6.9e-39 158.3
Bma02g01204 BCT 36 202 G2-like Transcription Factor Family AT1G79430 61.5 1.1e-36 151.0
Bma01g02700 . 1 306 G2-like Transcription Factor Family AT3G10760 65.1 2.2e-95 345.9
Bma05g01331 . 1 309 G2-like Transcription Factor Family AT3G10760 64.6 1.9e-91 332.8
Bma01g02700 . 1 208 G2-like Transcription Factor Family AT2G40970 64.0 1.9e-64 242.7
Bma05g01331 . 1 207 G2-like Transcription Factor Family AT2G40970 62.7 1.4e-62 236.5
Bma13g00423 . 91 323 G2-like Transcription Factor Family AT4G28610 51.0 2.0e-50 196.8
Bma14g01215 . 4 225 G2-like Transcription Factor Family AT4G28610 50.4 1.5e-42 170.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001069 3 4 3 4 3 2 4 2 2 2 2 2 4 2 2 4 2 3 3 2 2 2 2 2 2 2 1 6 5 2 81
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58117 PF00249 Myb_DNA-binding 1.20E-07 CL0123 Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00572 Bma_Chr12 FPKM 0.022661 0.0 0.0 0.068964 0.0 0.0 0.0 0.26321 0.168178 0.07365
Bma12g00572 Bma_Chr12 FPKM 0.022661 0.0 0.0 0.068964 0.0 0.0 0.0 0.26321 0.168178 0.056849
Bma12g00572 Bma_Chr12 FPKM 0.022661 0.0 0.0 0.068964 0.0 0.0 0.0 0.282027 0.152788 0.07365
Bma12g00572 Bma_Chr12 FPKM 0.022661 0.0 0.0 0.068964 0.0 0.0 0.0 0.282027 0.168178 0.056849