Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00574 ATGGAGGCTGAGAGAATCAGGACTCAACTGAATGGTTCAGGTATTTGGCGGACCCAAGGCCTCATTGCCGGCAAATGGACTGATGCCTATGATGGGAAAACCATTAAGGTTTACAATCCAGCAACGGGCGAGGCTATAGCAGATGTCCCATGTATGGGTGCCAAGGAGACAAATGATGCTATCTCTTCAGCCTATGATGCTTTTAAGTGCAAGGCTTTCTTACTAATCACTGCATTTATATATGAACTTACGTATGATCTACTGATTGCACACAAAGAAGAGCTTGGACAACTTATAACCTTAGAGCAAGGGAAACCTCTTAAAGAAGCCATTGGCGAGGTTGGCTATGGAGCCAGCTTCATCGAATTCTTTGCAGAAGAAGCTAAACGGGTGTATGGTGATATAATTCCATCCACTTTGGATGATCGCCGACTTTTAGTCATGAAGCAGCCTGTTGGAGTTGTTGGTGCGATTACCCCTTGGAACTTTCCTTTGGCAATGATCACTCGAAAGGTTGGTCCTGCTCTTGCTTGTGGCTGTACTGTTGTTATAAAACCATCTGAACTGACACCACTCACAGCTTTAGCAGCTGCTGAGCTTTCTCTTCAGGCGGGAATTCCCCATGGCGCTGTGAATGTGGTGATGGGAAATGCTTCAGAAATTGGGGGTGCTTTACTTGCCAGCAAACAGGTAAGAAAGATAACATTCACAGGCTCAACAGCTGTGGGAAAGAAGCTTATGGCTGGTGCTGCAGAGACTGTTAAAAAGGTGTCTTTGGAACTCGGTGGTAATGCACCTTGTATTGTCTTTGATGATGCAGACATTGAGGTTGCAGTAAAAGGAACTCTAGCTGCGAAGTTCCGGAATAGTGGACAAACTTGTGTTTGTGCCAACAGGGTTCTTGTTCAAGAAGGTATATATGAGAAATTTGCGACCGCCTTTACCAAAGCAGTCCAGAATCTGCAAGTTGGAGATGGCTTCAGTGAAGGTGTGGCTCAGGGTCCTCTCATTAATGACGCTGCAGTGCAAAAGTACTCAACTAATATCTATTTGAAGGGTGCAAAAGTTCTTCTGGGGGGTCAAAGGCATAGGCTTGGGATGACATTTTATGAGCCTACAGTTCTTACAAGTGTCAAAAATGATATGCTGGTAGCGAGAGAGGAAGTATTTGGTCCTGTGGCGCCTCTTTTGCCGTTCAAAACTGAGAATGAAGCAATTTCCATTGCAAATGACACCAATGCAGGGTTAGCTGCCTATATATTTACAAACAATGTCCAACGAACTTGGCGTGTTGCTGAATCTCTTGAGTACGGTCTTGTTGGCGTCAACGAAGGATTGATTTCTACAGAGGTAGCTCCATTCGGAGGTTTTAAACAGTCGGGGCTTGGTCGGGAAGGTTCCAAATACGGCATGGATGATTATTTGGAGGTAACTACGTTTGATGAGTACTCTTTAAGTAAATCTTAG 1467 44.65 MEAERIRTQLNGSGIWRTQGLIAGKWTDAYDGKTIKVYNPATGEAIADVPCMGAKETNDAISSAYDAFKCKAFLLITAFIYELTYDLLIAHKEELGQLITLEQGKPLKEAIGEVGYGASFIEFFAEEAKRVYGDIIPSTLDDRRLLVMKQPVGVVGAITPWNFPLAMITRKVGPALACGCTVVIKPSELTPLTALAAAELSLQAGIPHGAVNVVMGNASEIGGALLASKQVRKITFTGSTAVGKKLMAGAAETVKKVSLELGGNAPCIVFDDADIEVAVKGTLAAKFRNSGQTCVCANRVLVQEGIYEKFATAFTKAVQNLQVGDGFSEGVAQGPLINDAAVQKYSTNIYLKGAKVLLGGQRHRLGMTFYEPTVLTSVKNDMLVAREEVFGPVAPLLPFKTENEAISIANDTNAGLAAYIFTNNVQRTWRVAESLEYGLVGVNEGLISTEVAPFGGFKQSGLGREGSKYGMDDYLEVTTFDEYSLSKS 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 24926926 24937945 - Bma007734.2 Bma12g00574 92000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00574 488 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 259 266 IPR029510 GO:0016491
Bma12g00574 488 SUPERFAMILY ALDH-like 15 479 IPR016161 GO:0016491
Bma12g00574 488 Pfam Aldehyde dehydrogenase family 26 479 IPR015590 GO:0016491
Bma12g00574 488 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 32 474 IPR016162 GO:0016491
Bma12g00574 488 CDD ALDH_F5_SSADH_GabD 37 477 - -
Bma12g00574 488 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 263 449 IPR016163 GO:0016620
Bma12g00574 488 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 287 298 IPR016160 GO:0016491
Bma12g00574 488 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 15 479 - -
Bma12g00574 488 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 15 479 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g00367 Bma-Chr12:6536750 Bma12g00574 Bma-Chr12:24926926 0 dispersed
Bma12g00574 Bma-Chr12:24926926 Bma01g00054 Bma-Chr1:575450 3.67E-96 dispersed
Bma12g00574 Bma-Chr12:24926926 Bma12g01022 Bma-Chr12:42322685 1.31E-97 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00574 K17761 - twl:119988855 757.673