Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00577 ATGAAGATGTTTAAGTACTTGGACGTGGTGGGTCAGAAGATACAACACCTTGGCATTGATGGGGTCGATTCACCCAACACAGAGCCATACCCGAATTCTCCATTTTCTCTCCCACCCTTTGATTCACTACCTCCGATTCCTCTCCCCCCAAACGCGCCTCCTTATTGCATTTACCCGCCCAACACTCCTCAAACGCCGGCGATAACTATTCCGACGCCATATGCTTACGCTCCTCCGCCGCCTCCTTTCTACTCCTCTCTCCCTCCTCTTCTTCCCATTTACAATCCACCTCCACCTCCGGCGATAACTATTCCGACGCCTTATGCTTACGCTCCTCCGCCGCCTCCTTTCTACTCCTCTCTCCCTCCTCTTCTTCCCATTTACAATCCACCTCCACCTCCGGCTCCATCGGGGACGATTCCCCCTACCGTGTTCGAGCCGCCCGTGGTGTACCCTCCGCCGTCAGTGCCACCGCCCCCCAACTCGGCTCCAGACATTGCTCGTTGGTGCGTGGCCAAGCCGTCGGTGCCCGACCCCATCATCCAAGAGGCCATGAACTATGCTTGTGGTTCTGGTGCAGACTGCGATTCCATTCAGCCCAATGGCTTCTGCTTTCATCCCGACACATTGTTCGCCCACGCTTCCTTCGCTTTCAACAGCTACTGGCAAAGGACCAAAGTCGCTGGTGGCACCTGCGACTTTGGAGGGACGGCCATGTTTGTCACTGTTGATCCAAGTAACTTCAAACTTTCCACTTCATGCTCTGCCATGTTTTAG 777 54.83 MKMFKYLDVVGQKIQHLGIDGVDSPNTEPYPNSPFSLPPFDSLPPIPLPPNAPPYCIYPPNTPQTPAITIPTPYAYAPPPPPFYSSLPPLLPIYNPPPPPAITIPTPYAYAPPPPPFYSSLPPLLPIYNPPPPPAPSGTIPPTVFEPPVVYPPPSVPPPPNSAPDIARWCVAKPSVPDPIIQEAMNYACGSGADCDSIQPNGFCFHPDTLFAHASFAFNSYWQRTKVAGGTCDFGGTAMFVTVDPSNFKLSTSCSAMF 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 25021996 25022922 - Bma007738.1 Bma12g00577 92003

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00577 258 PANTHER BETA-1,3 GLUCANASE 125 246 IPR044788 -
Bma12g00577 258 Pfam X8 domain 169 239 IPR012946 -
Bma12g00577 258 PANTHER EXTENSIN-LIKE 125 246 - -
Bma12g00577 258 Gene3D - 164 258 - -
Bma12g00577 258 SMART X8_cls 168 256 IPR012946 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00577 - - - tcc:18602749 175.637
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00348 Bma-Chr6:7740320 Bma12g00577 Bma-Chr12:25021996 4.74E-36 dispersed
Bma07g01106 Bma-Chr7:44208314 Bma12g00577 Bma-Chr12:25021996 6.24E-42 dispersed
Bma12g00577 Bma-Chr12:25021996 Bma12g00970 Bma-Chr12:41688295 2.19E-25 dispersed
Bma12g00577 Bma-Chr12:25021996 Bma07g00899 Bma-Chr7:31377916 6.39E-46 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1163 . . . . Bpe07g00474 . . . . . . . . . . . . Bhi05g01989 . . Lac12g0036 Hepe02g0010 . . . . . . . . . . . . . . Csa07g01215 . . . . . . . . . Bma12g00577 . . . . . . . Cpe15g00907 . . . . . . . . . . . . . . . . . Chy01g00848 Cme01g01498
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007417 1 1 1 3 1 1 1 1 1 1 1 1 0 1 1 1 1 3 1 1 1 1 1 1 0 1 1 3 2 2 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00577 Bma_Chr12 FPKM 12.98351 11.759055 7.933385 7.690538 18.16958 20.309334 19.832239 1.672023 1.704245 1.354973