Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00579 ATGGCTTCCGCAACTTCGACCACGAGACTCTCTTTCCTCCCCACCACCACATCATCGTCAACCTCCACAACTCGCTCTTCCCTTCTCCAAGTCTCACCCACATCGTCTTCGTCGTCCATTCGCCTCCGCACCTCTTGCATTCAGCGCCTCGGTTTCACCGCCGTCGACCCACTGTTCTCTCTCCATGTCGCTTCAAAAGTAGGATTGTTTAGAGGTAAAGCTTCAAGGGCCGTGGCATCGATGGCCAAGAGGAGCGTCGGTGATTTGACTGCTGCTGACTTGAAAGGTAAGAGGGTGCTTGTGAGGGCAGACTTGAATGTTCCTTTAGATGATGCCCAGAATATTACCGACGATACTAGGATCAGGGCTGCCATTCCCACCATCAAGCATCTCATTCAAAATGGAGCTAAAGTTCTTCTGTCCAGCCATTTGGGAAGACCCAAAGGTGTTACTCCCAAATACAGTTTGGCACCTCTTGTACCTAGACTCTCTGAACTGCTCGGCATTCAGGTTGTGATGGCCACCGACTGTATTGGTGAAGAGGTTGAAAAGTCGGTGTCTGCGCTTTCAGAAGGTGGTGTTCTTCTGCTCGAAAATGTCCGATTTTACAAGGAAGAAGAGAAGAATGACCCCGAGTTTGCGAAAAAGCTTGCATCTATCGCAGATCTCTATGTAAACGACGCATTTGGTACTGCTCATAGAGCTCATGCTTCGACTGAAGGTGTCACGAAATTCCTTAAGCCATCTGTAGCTGGTTTTCTCTTACAAAAGGAACTTGATTACCTTGTTGGGGCAGTATCCAGCCCAAAAAGGCCATTTGCAGCCATTGTAGGTGGTTCGAAGGTCTCATCAAAGATCGGTGTGATCGAGTCGCTTCTGGAGAAGTGTGACATCCTACTTCTTGGTGGGGGAATGATCTTTACATTTTACAAGGCACAGGGTCTCTCTGTGGGCTCATCTTTGGTAGAGGAGGATAAGCTAGATCTTGCCACATCCCTCCTTGCAAAGGCTAAGGCCAAAGGAGTGTCTCTTCTGTTACCAACTGATGTTGTCATTGCCGACAAGTTTGCTCCTGATGCAAACAGCAAGATTGTCCCAGCAAGTGCAATCCCCGACGGCTGGATGGGATTGGATATTGGACCGGATTCCATCAAGACATTCAACGACGCTTTGGAAACAACAAAAACCGTAATCTGGAATGGACCAATGGGAGTGTTTGAGTTCGACAAGTTTGCAGTTGGAACAGTGGCTGTAGCTAAGAAACTAGCTGAACTGAGTGGGAAGGGAGTAACGACTATTATCGGAGGCGGAGATTCAGTGGCAGCCGTGGAGAAGGTAGGAGTTGCAGGCGTGATGAGCCACATCTCGACGGGTGGTGGTGCGAGCTTGGAATTGTTGGAAGGCAAAGAGCTTCCTGGCGTACTTGCCCTCGACGAAGCAACCCCGGTGGCTGTGTGA 1458 49.52 MASATSTTRLSFLPTTTSSSTSTTRSSLLQVSPTSSSSSIRLRTSCIQRLGFTAVDPLFSLHVASKVGLFRGKASRAVASMAKRSVGDLTAADLKGKRVLVRADLNVPLDDAQNITDDTRIRAAIPTIKHLIQNGAKVLLSSHLGRPKGVTPKYSLAPLVPRLSELLGIQVVMATDCIGEEVEKSVSALSEGGVLLLENVRFYKEEEKNDPEFAKKLASIADLYVNDAFGTAHRAHASTEGVTKFLKPSVAGFLLQKELDYLVGAVSSPKRPFAAIVGGSKVSSKIGVIESLLEKCDILLLGGGMIFTFYKAQGLSVGSSLVEEDKLDLATSLLAKAKAKGVSLLLPTDVVIADKFAPDANSKIVPASAIPDGWMGLDIGPDSIKTFNDALETTKTVIWNGPMGVFEFDKFAVGTVAVAKKLAELSGKGVTTIIGGGDSVAAVEKVGVAGVMSHISTGGGASLELLEGKELPGVLALDEATPVAV 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 25156246 25158626 - Bma007741.1 Bma12g00579 92005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00579 485 PANTHER PHOSPHOGLYCERATE KINASE 1 480 - -
Bma12g00579 485 SUPERFAMILY Phosphoglycerate kinase 88 479 IPR036043 GO:0004618|GO:0006096
Bma12g00579 485 MobiDBLite consensus disorder prediction 1 30 - -
Bma12g00579 485 CDD Phosphoglycerate_kinase 89 479 IPR001576 GO:0004618|GO:0006096
Bma12g00579 485 PANTHER PHOSPHOGLYCERATE KINASE 1 480 IPR001576 GO:0004618|GO:0006096
Bma12g00579 485 Gene3D - 87 263 IPR015824 GO:0004618|GO:0006096
Bma12g00579 485 Gene3D - 266 479 IPR015824 GO:0004618|GO:0006096
Bma12g00579 485 Hamap Phosphoglycerate kinase [pgk]. 88 479 IPR001576 GO:0004618|GO:0006096
Bma12g00579 485 Pfam Phosphoglycerate kinase 91 469 IPR001576 GO:0004618|GO:0006096
Bma12g00579 485 ProSitePatterns Phosphoglycerate kinase signature. 98 108 IPR015911 GO:0004618|GO:0006096
Bma12g00579 485 PRINTS Phosphoglycerate kinase family signature 396 421 IPR001576 GO:0004618|GO:0006096
Bma12g00579 485 PRINTS Phosphoglycerate kinase family signature 455 472 IPR001576 GO:0004618|GO:0006096
Bma12g00579 485 PRINTS Phosphoglycerate kinase family signature 115 137 IPR001576 GO:0004618|GO:0006096
Bma12g00579 485 PRINTS Phosphoglycerate kinase family signature 192 207 IPR001576 GO:0004618|GO:0006096
Bma12g00579 485 PRINTS Phosphoglycerate kinase family signature 432 443 IPR001576 GO:0004618|GO:0006096
Bma12g00579 485 PRINTS Phosphoglycerate kinase family signature 93 109 IPR001576 GO:0004618|GO:0006096
Bma12g00579 485 PRINTS Phosphoglycerate kinase family signature 220 242 IPR001576 GO:0004618|GO:0006096
Bma12g00579 485 PRINTS Phosphoglycerate kinase family signature 274 293 IPR001576 GO:0004618|GO:0006096
Bma12g00579 485 PRINTS Phosphoglycerate kinase family signature 251 273 IPR001576 GO:0004618|GO:0006096
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma08g00819 Bma12g00579 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00819 Bma-Chr8:45895131 Bma12g00579 Bma-Chr12:25156246 0 dispersed
Bma10g00037 Bma-Chr10:408949 Bma12g00579 Bma-Chr12:25156246 2.58E-50 dispersed
Bma12g00579 Bma-Chr12:25156246 Bma03g00497 Bma-Chr3:3899461 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00579 K00927 - csv:101215670 774.237