Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00584 ATGATTGCACTCAATTTGATTTTTCAATGTTCTTTTTTTTCCTCTCTTATTTTTAGCATGTGGAAGCATCATGTGAGAAAAGGGGATACAGTGATTGATGCCACATGTGGAAATGGTTATGATACTTTAGCTATGGCCAAAATGGTTAGTGATGACTCGCAATTAGGTCGTGTTTATGCCATGGACATTCAGCAAGAAGCTTTAGACAATACCTCTGCATTGTTGGAGCAGTTGCTAAATGAAAAAGAGAGAGAGCTTGTTAAGCTCTTCCCTATATGCCATAGCAGAATGGAGGACGTTGTTCCAGAGAGTTGCCCTGTTAGGCTTGTAGCTTTCAATCTGGGGTACCTACCCGGTGGGGACAAAGCAATAATCACACAGCCTGGGACAACACTAGAAGCATTGGAAGCTGCAAAGAGAGTGGTATCACCTGGAGGACTCATAAGCATTGTGGTTTACGTGGGACATTCCGGTGGACTGGACGAAATGGAGAGCATTCAGAAGTTTGCTGGTGAGTTGGCGGACGATGAATGGGTCTGCTGTAAGTTAGAGAGGTTAAACCAACGGCTGGCACCTGTTCCGATCTTCTTGTTCAAGCGATGA 603 44.28 MIALNLIFQCSFFSSLIFSMWKHHVRKGDTVIDATCGNGYDTLAMAKMVSDDSQLGRVYAMDIQQEALDNTSALLEQLLNEKERELVKLFPICHSRMEDVVPESCPVRLVAFNLGYLPGGDKAIITQPGTTLEALEAAKRVVSPGGLISIVVYVGHSGGLDEMESIQKFAGELADDEWVCCKLERLNQRLAPVPIFLFKR 200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 25445708 25446895 + Bma007750.1 Bma12g00584 92010

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00584 200 CDD AdoMet_MTases 30 155 - -
Bma12g00584 200 Pfam Putative rRNA methylase 58 196 IPR010719 -
Bma12g00584 200 Gene3D Vaccinia Virus protein VP39 13 200 IPR029063 -
Bma12g00584 200 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASES SUPERFAMILY PROTEIN 19 200 IPR010719 -
Bma12g00584 200 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 24 180 IPR029063 -
Bma12g00584 200 Coils Coil 61 88 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00584 - - - cmos:111448248 271.166
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1127 . . . . . . . . . . . . . . . . Cpe16g00712 . . . . . . . Cla02g01823 Cam02g1931 Cec02g1956 Cco02g1997 Clacu02g1912 Cmu02g1860 Cre02g2174 . . . . . . . . Blo15g00629 . . . . . . Bma12g00584 . . . . . . . . . Bhi10g00951 Tan05g0596 . . . . . . . . . . . . . Csa06g01157 Chy11g01034 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006555 1 5 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 3 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00584 Bma_Chr12 FPKM 4.412055 5.519995 9.724916 9.132015 10.361444 9.577041 10.518193 8.050315 9.590096 9.165935