Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00587 ATGCAGATCTTTGTCAAAACCCTCACCGGTAAGACCATAACGCTCGAGGTTGAGAGCAGTGATACCATCGACAATGTCAAGGCAAAGATTCAGGATAAGGAAGGTATTCCTCCTGATCAACAAAGATTGATTTTTGCTGGTAAGCAGCTGGAAGATGGTCGAACACTGGCAGATTATAACATTCAAAAGGAATCTACACTTCATTTGGTGTTGAGGCTCAGGGGAGGGACTATGATTAAGGTCAAGACCCTCACAGGGAAGGAAATTGAGATTGATATTGAGCCAACTGACACAATTGAACGCATCAAGGAACGTGTTGAGGAGAAAGAGGGAATTCCTCCGGTGCAGCAAAGGCTTATATATGCAGGTAAACAGCTTGCAGATGACAAAACGGCCAAGGACTATAACATTGTAGGTGGGTCCGTTCTCCACCTGGTTCTTGCACTGAGGGGTGGCTCTCTCTAA 465 45.38 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIVGGSVLHLVLALRGGSL 154
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 25763986 25766981 - Bma007755.1 Bma12g00587 92013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00587 154 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Bma12g00587 154 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Bma12g00587 154 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Bma12g00587 154 PANTHER - 1 152 - -
Bma12g00587 154 ProSitePatterns Ubiquitin domain signature. 103 128 IPR019954 -
Bma12g00587 154 Pfam Ubiquitin family 79 150 IPR000626 GO:0005515
Bma12g00587 154 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Bma12g00587 154 PANTHER UBIQUITIN 1 152 - -
Bma12g00587 154 PRINTS Ubiquitin signature 53 74 IPR019956 -
Bma12g00587 154 PRINTS Ubiquitin signature 11 31 IPR019956 -
Bma12g00587 154 PRINTS Ubiquitin signature 32 52 IPR019956 -
Bma12g00587 154 CDD Ubl_NEDD8 79 152 IPR038738 -
Bma12g00587 154 ProSiteProfiles Ubiquitin domain profile. 77 152 IPR000626 GO:0005515
Bma12g00587 154 CDD Ubl_ubiquitin 1 76 - -
Bma12g00587 154 Gene3D - 78 154 - -
Bma12g00587 154 Gene3D - 1 77 - -
Bma12g00587 154 SMART ubq_7 1 72 IPR000626 GO:0005515
Bma12g00587 154 SMART ubq_7 77 148 IPR000626 GO:0005515
Bma12g00587 154 SUPERFAMILY Ubiquitin-like 78 152 IPR029071 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma08g00816 Bma12g00587 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00816 Bma-Chr8:45823120 Bma12g00587 Bma-Chr12:25763986 1.60E-105 dispersed
Bma10g00105 Bma-Chr10:1015612 Bma12g00587 Bma-Chr12:25763986 1.99E-26 dispersed
Bma12g00587 Bma-Chr12:25763986 Bma14g01567 Bma-Chr14:32343685 1.93E-36 dispersed
Bma12g00587 Bma-Chr12:25763986 Bma14g00353 Bma-Chr14:4327310 1.51E-80 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00587 K12158 - mnt:112090934 280.411