Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00591 ATGGCATCTGCGTCTTTGAATAAGATTGAACGAGCTCACCAGATGTATAGAGAAGGATGTTACGATGAAGCTCTCCGATTTTATACAGAAGCCCTTGCCATGACTAAGACCAAGACCCAAAACATTGCCCTCCACAGCAATAGAGCTGCTTGTTATTTGAAACTTCACGATTTCAAGAAGGCTGCAGAAGAATGTACTTCAGTGCTCGAGCTTGATCATAAGCACACAGGAGCTTTAATGCTTAGAGCTCAGACTCTTGTTACCCTCAAGGAATATCAATCTGCACTTTTTGATGTCAACAGGCTTATAGAGTTGAATCCATCATCTGAAGTGTATCAAAATCTTCAAACCCGTTTGAAGACTCAATTGTCACTTGCTCCAATACCTGAATCTGAAGCAGAATTCGAAGGAGAAGAAGAAGATGATGCCCAGCTAAACCCTTGTGAGACAAACAAGGAGCAATCTGAAGGAAAGCAAGCTGCAAAAGTCAAGGCTAATCAGAAAGCTGAGCTTCTTATTAGCACCACTGATGCTGAATCTGTCGCCCCTACAAGACAGACCAATGTATTGTTAGAAAAAGTAGTGGATCAGAATGTCTCGTCTGACATAACTACTATAAGTACTGGGCATGCACCTCCAATGCAGAGCATGCAGGGTCCACTGGAACGAGATCCCAATGGATGGCATTCAATTCCGAAGCCAAAAGGACACTCAGCCTTAGATTATGGTCGGTGGGATAGGGTTGATGATGACTCTAGTGAAGAAGATGATGATGACGAAGAAGAGGATTCTCAACCTCAGTATCGCTTTCGTGTTAGAACAGTTGGTGTGAAATCGGTAAAATAA 846 42.79 MASASLNKIERAHQMYREGCYDEALRFYTEALAMTKTKTQNIALHSNRAACYLKLHDFKKAAEECTSVLELDHKHTGALMLRAQTLVTLKEYQSALFDVNRLIELNPSSEVYQNLQTRLKTQLSLAPIPESEAEFEGEEEDDAQLNPCETNKEQSEGKQAAKVKANQKAELLISTTDAESVAPTRQTNVLLEKVVDQNVSSDITTISTGHAPPMQSMQGPLERDPNGWHSIPKPKGHSALDYGRWDRVDDDSSEEDDDDEEEDSQPQYRFRVRTVGVKSVK 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 26059747 26061663 + Bma030505 Bma12g00591 92017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00591 281 Gene3D Tetratricopeptide repeat domain 3 136 IPR011990 GO:0005515
Bma12g00591 281 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 1 281 - -
Bma12g00591 281 MobiDBLite consensus disorder prediction 204 281 - -
Bma12g00591 281 SMART tpr_5 76 109 IPR019734 GO:0005515
Bma12g00591 281 SMART tpr_5 5 38 IPR019734 GO:0005515
Bma12g00591 281 SMART tpr_5 42 75 IPR019734 GO:0005515
Bma12g00591 281 Pfam Anaphase-promoting complex, cyclosome, subunit 3 21 96 - -
Bma12g00591 281 SUPERFAMILY TPR-like 10 120 IPR011990 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g00591 Bma-Chr12:26059747 Bma09g00584 Bma-Chr9:42927416 7.71E-08 dispersed
Bma12g00591 Bma-Chr12:26059747 Bma04g00694 Bma-Chr4:7031982 6.03E-08 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00591 - - csv:101219918 329.717