Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00592 ATACATATGGCTAGTTTTCTTCCTGGTGATTCAACGCTTCATGGAATGTATGAAGGTGGTTCTTCTTCTCAGGACAAGTCTGAAGATGGTGCTCGATGGTACTTTTCCCGGAAGGAAATTGAAGAAAGTTCGCCATCTAAACAGGATGGGATTGATTTGAAAAAGGAGAGTTATCTACGCAAGTCATATTGTACCTTTTTGCAAGATCTGGGAATGAGGCTGAAAGTACCTCAGGTAACAATTGCTACGGCTATAATTTTCTGCCACCGGTTTTTTCTTCGACAATCCCTTGCAAAGAACGATAGAAGGACCATTGCAACCATATGCATGTTTCTTGCTGGGAAAGTAGAAGAAACTCCGCGTCCGCTGAAAGATGTTATCCTTGTTTCATATGAGATTATACATAAAAAGGATGCAGCCGCAGTTCAAAAGATCAAGCAAAAGGAGGTGTATGAACAGCAAAAAGAACTAATCTTACTTGGAGAGAGACTTGTTCTTGCAACTCTTGGTTTTGATCTTAATGTGCACCATCCCTACAAACCCCTCGTTGAGGCAATAAAAAAATTCAAAGTTGCTCAAAATGCCCTTGCACAAGTAGCATGGAATTTTGTTAATGATGGATTGAGGACATCTCTTTGCTTGCAATTTAAACCCCACCACATTGCTGCTGGTGCCATTTTCCTTGCTGCTAAGTTCCTTAAAGTAAAGCTCCCATCAGATGGGGAGAAGGTGTGGTGGCAAGAGTTTGATGTCACCCCACGTCAGTTGGAGGAAGTTAGCAACCAGATGTTGGAACTATACGAACAGAATCGAGTGCCACCTTCGAGTGAAGTTGATGGAAGCGCAATTGATGGATCTACCAATCGGATCTCTACTAAAGTTCCCACTAGCAGTGAAGAACACGTGCCAACACATAATCATTCACAGGCTGGAGGTACTTGCTCCAGATCTGCAACTTCTAAGCCGGGATCGTCAAGGCCGGCATGTGAACAATCATGTAAAGATCTTCATAGCGAGCCTCAGCGACCCAATCGGAGTCAAAGTAGTGAAAACGGGAGTATGGAGATGAAACATTATGTGAATCTCAAAGAAGATGGTGACTATAAACTAAATCCATATCATGAATCAGAGCCGCCCTTGCCTTCTCAGGACAGCATGAGTAAAGTTCAGAATTTGTCAAAGTTTTGGTCGGAGAGATTGGACGAACAAAATCAAGAAAGCAGTTTGAGAACTAATGAAGCAAGAGAAGCAGTGGACTTGAAGGATAAACATGCGAGCAGAGGAGTAGAGGATAAAGATGGTGCAATTCGGTGGTCACCTCGGGACGTAATAAAAAAGATTGATAAGGACAAGGTAAAGGCGGCATTGGAGAAACGGAGGAAGTCCCTTGGTGGTGTCACTCGGAAAACAGAATCAATGGACGAAGATGATCTCATCGAGAGGGAGCTCGAAGCTGGCATTGAACTGGCTGCCGAAAGTGAGAAAAATAAACGAGAGGTAAGGCAAGGTTGGGCTAAGTCGTCGAATAGACCAGAATATGAGGATTTGCATCAAGAAAGGGATAGAGATGACCGTCGCCAAGGAGTGATAGGACAATCAAATTATGGGCCTGATTTAAATAACATGGAAGAAGGGGAGTTATCAATTACTAATGATCCTGGCATAGAATATCAATCCCCAAAGTCAGGAAGCCGCAAACGAAAGGCTGGGAGCCCACCCGACAAAGTGTTTGAGGGGAAGCAGTGGCAAGATTCATTGGCTGCATCTCACCGAGATAAGCACTCTGATTATATGGGAGATGGAAACAGTGTAGGTCGGGTTCGTCACGTCGACAGGGACCACAAGCGGCATGTTCAAGAAAATCATGTATGA 1872 43.86 IHMASFLPGDSTLHGMYEGGSSSQDKSEDGARWYFSRKEIEESSPSKQDGIDLKKESYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFLRQSLAKNDRRTIATICMFLAGKVEETPRPLKDVILVSYEIIHKKDAAAVQKIKQKEVYEQQKELILLGERLVLATLGFDLNVHHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGEKVWWQEFDVTPRQLEEVSNQMLELYEQNRVPPSSEVDGSAIDGSTNRISTKVPTSSEEHVPTHNHSQAGGTCSRSATSKPGSSRPACEQSCKDLHSEPQRPNRSQSSENGSMEMKHYVNLKEDGDYKLNPYHESEPPLPSQDSMSKVQNLSKFWSERLDEQNQESSLRTNEAREAVDLKDKHASRGVEDKDGAIRWSPRDVIKKIDKDKVKAALEKRRKSLGGVTRKTESMDEDDLIERELEAGIELAAESEKNKREVRQGWAKSSNRPEYEDLHQERDRDDRRQGVIGQSNYGPDLNNMEEGELSITNDPGIEYQSPKSGSRKRKAGSPPDKVFEGKQWQDSLAASHRDKHSDYMGDGNSVGRVRHVDRDHKRHVQENHV 623
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 26227960 26234838 + Bma007761.1 Bma12g00592 92018

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00592 623 MobiDBLite consensus disorder prediction 533 558 - -
Bma12g00592 623 Pfam Cyclin, N-terminal domain 34 174 IPR006671 -
Bma12g00592 623 CDD CYCLIN 174 235 IPR013763 -
Bma12g00592 623 PIRSF Cyclin_L 31 486 - -
Bma12g00592 623 PIRSF Cyclin_L 391 622 - -
Bma12g00592 623 PANTHER - 4 528 - -
Bma12g00592 623 SMART cyclin_7 65 167 IPR013763 -
Bma12g00592 623 SMART cyclin_7 180 265 IPR013763 -
Bma12g00592 623 MobiDBLite consensus disorder prediction 489 623 - -
Bma12g00592 623 CDD CYCLIN 59 130 IPR013763 -
Bma12g00592 623 MobiDBLite consensus disorder prediction 268 354 - -
Bma12g00592 623 MobiDBLite consensus disorder prediction 268 327 - -
Bma12g00592 623 PANTHER CYCLIN 4 528 IPR043198 GO:0006357|GO:0016538
Bma12g00592 623 MobiDBLite consensus disorder prediction 585 623 - -
Bma12g00592 623 MobiDBLite consensus disorder prediction 489 528 - -
Bma12g00592 623 SUPERFAMILY Cyclin-like 29 175 IPR036915 -
Bma12g00592 623 MobiDBLite consensus disorder prediction 400 433 - -
Bma12g00592 623 SUPERFAMILY Cyclin-like 176 272 IPR036915 -
Bma12g00592 623 MobiDBLite consensus disorder prediction 367 388 - -
Bma12g00592 623 Gene3D - 175 278 - -
Bma12g00592 623 Gene3D - 20 173 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00592 K15188 CCNT; cyclin T - vvi:100265067 800.816
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00793 Bma-Chr4:9020235 Bma12g00592 Bma-Chr12:26227960 2.97E-38 dispersed
Bma11g00438 Bma-Chr11:4841654 Bma12g00592 Bma-Chr12:26227960 4.61E-141 dispersed
Bma12g00592 Bma-Chr12:26227960 Bma07g00425 Bma-Chr7:5201650 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1087 . . . . Bpe07g00462 . . . . . . . . . . . Cpe16g00717 . . . . . . . Cla02g01817 Cam02g1923 Cec02g1948 . . Cmu02g1852 . . . . . . . . Cme11g01601 . . . . . . . Bma12g00592 . . . . . . . . . Bhi10g00958 . . . Hepe08g0633 . . . . . . . . . . Csa06g01165 Chy11g01027 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000905 2 5 2 4 2 3 4 3 3 2 3 2 4 1 2 4 3 3 3 1 2 2 3 3 3 2 2 5 2 1 81
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00592 Bma_Chr12 FPKM 1.759798 1.621776 0.118564 0.268466 7.770618 7.445928 7.300817 0.146282 0.215992 0.257197