Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00606 ATGGAGAACGATTGTTGGGTATGGGAGCAGAGGACACTGATAAGGGAGCTGATTCAGGGGATGGAGATGACGAAGCAGTTGAAAGAAGAGCTAACATCAACCTCCCCGAATGAAGTAAGCAGAGAATTATTAGTACAGGGGATTTTATCTTCCTACGAGAAAGCTCTTTTGATACTTCAATGGAGTGGATCGACTACTCAGCCGCAGTCTCCGAATCTCATCAATGAAAGTCCTCAGGCTGACGAATTAGGCAGAGGCGTAGAGGACGACTATCAGGAGAATGAAAAGGGCTCGAAGAAGAGAAAGATGACGCCAAAATGGACAGAGCAAGTGAGACTAAATTCAGAAAATGGGTTAGATGGGCAACACGAGGATAGCTATAACTGGAGAAAATATGGCCAAAAAGACATCCTAGGCGCCAAATTTCCCAGAAGCTACTACAGATGCTCTTATCGCAACACTAAAAACTGTTGGGCGACAAAGCAAGTGCAGAGATCTGACGAAAACACTGCAGTTTTCGAAATAACATACAGAGGAAAACATACCTGCTCAAATGGCGGCCAACCAAATCCGCCATTGTCGTCGCTGGAGAAGCAAGAGCAGAAGCTGAACACGGACGAGATTCGTCATCAACAGCAGAATTACAAGGAAAGTGGGCCCGTTTTCTGTTTCCCTTCTTCCCCGTTTGGACGCGGCCATGGATTTCCAGTTGATGATGATTCCTCTCTTTTCAATACCTTTTCTCAGCCATTCGTCTTTCCGAACACGCTTGAATCGAGCTCTGGGTTTTCTTCCTGCGAGAAATTTTTCAATTTAGGGACTCAAAAAGTGCAGAGATCGGAATCTGATTTAACAGATATTTTCTCGGCGACTACCTCGTCTACCAACTCACCGATTCTGGACTTGGATTTTGCCCTTGACTCGGTGCAGATTGACTCAAATTTTCCATTTGGCAGCAGCCATGGATTTTTTCCTTAA 978 45.09 MENDCWVWEQRTLIRELIQGMEMTKQLKEELTSTSPNEVSRELLVQGILSSYEKALLILQWSGSTTQPQSPNLINESPQADELGRGVEDDYQENEKGSKKRKMTPKWTEQVRLNSENGLDGQHEDSYNWRKYGQKDILGAKFPRSYYRCSYRNTKNCWATKQVQRSDENTAVFEITYRGKHTCSNGGQPNPPLSSLEKQEQKLNTDEIRHQQQNYKESGPVFCFPSSPFGRGHGFPVDDDSSLFNTFSQPFVFPNTLESSSGFSSCEKFFNLGTQKVQRSESDLTDIFSATTSSTNSPILDLDFALDSVQIDSNFPFGSSHGFFP 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 27387142 27388300 + Bma007782.1 Bma12g00606 92032

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00606 325 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 1 320 IPR044810 GO:0003700
Bma12g00606 325 Gene3D WRKY domain 106 186 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bma12g00606 325 ProSiteProfiles WRKY domain profile. 124 181 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma12g00606 325 MobiDBLite consensus disorder prediction 64 107 - -
Bma12g00606 325 Pfam WRKY DNA -binding domain 124 183 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma12g00606 325 MobiDBLite consensus disorder prediction 181 199 - -
Bma12g00606 325 SMART WRKY_cls 123 185 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma12g00606 325 PANTHER WRKY TRANSCRIPTION FACTOR 41-RELATED 1 320 - -
Bma12g00606 325 MobiDBLite consensus disorder prediction 82 107 - -
Bma12g00606 325 MobiDBLite consensus disorder prediction 181 201 - -
Bma12g00606 325 SUPERFAMILY WRKY DNA-binding domain 123 184 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00606 - - - bhj:120085685 322.398
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma12g00606 Bma14g00630 CCT
Bma12g00606 Bma14g00630 ECH
Bma05g00868 Bma12g00606 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g00606 Bma-Chr12:27387142 Bma14g00630 Bma-Chr14:6773024 1.14E-40 dispersed
Bma12g00046 Bma-Chr12:1032456 Bma12g00606 Bma-Chr12:27387142 0 wgd
Bma12g00606 Bma-Chr12:27387142 Bma05g00868 Bma-Chr5:46286951 8.10E-168 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g118 Blo02g01144 . . Bda08g00475 Bpe05g00686 Bpe07g00075 . Bma14g00630 Cmo06g01049 Cmo16g00604 . . . . . Cpe14g00467 . . . . . . . . Cla07g01418 Cam07g1519 Cec07g1615 Cco07g1575 Clacu07g1507 Cmu07g1477 Cre07g1854 . . Cone6ag0843 Cone9ag0840 . . . . . . Bda07g00461 . . . Bma05g00868 Bma12g00606 . . . . Cma16g00553 Car06g00866 . . . . . . . . . . . . . . . . . . Csa04g00648 Chy07g01162 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004375 2 1 3 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58119 PF03106 WRKY 3.80E-25 CL0274 Bma TF