Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00608 ATGGCTGCCCCCGGATTCTTCTTTCTGTTGTTTTTCTGCTTTATTCCTCGCACTGTAACGAGCGAGATTATCTGCAGAGAATCATCCTGCCTGCTAGGATTGGAACCGGTGGTTCGTTTCCCTTTCCGATTAAACAATACTAAACAAAGTCGCTGTGGCTACGGACCTGATTTCGTTCTTTCATGCGACGACCGGCGCCAGACAACTTTGAATCTCCCATCATCCGGACGATTCGTCGTCACTGAAATTGATTACTTGTCCCTAACATTGTCGATAGAGGATCCCGACGAATGCCTTCCGAGAAGGTTCCTTCAAAATTTCAGCGTCGCCAACTCGCCGTTCCTGGTTGATAGTTTCGAAAGCATAACGTTCGTCAACTGTTCAAATACCGATGAAGCGACTCCATATTTCAGGTCTATAAGTTGCCTCAGCGGCGATAACTTCACGGTCAAGGCAACGAAAACTGCTTTTATTGGCGAAATTTCTTCGATTCCACCGTCCTGCCGGTTGATTTCGCCGGTTATGGTTCCGATTACCTGGGGCAGTGGGTACTTCGGGATTAATGCATATATCAAGATACGTTGGACTGATCCTGATTGTAGTTCTTGTGAAAGGAGAGGTGGAGATTGTGGATTCACAAGCAGTTCGGGCCTAAATATTGGATGCTCTAATCTTCCAACTAGCGGTCTTCCGAGGGCGGCCAAGTACGGCATAATCTTAGGCGCAGTTATACCTGGGTTTCTCTTCATCATCGGCCTGTGTTCTTGCATATGTGCCAAGATGAGACTGAGGGCCTATCAGCGCGGAAACACGTCAGTCTCGGGCTCCGCCGTGGCGCTGGCCTCCGTCACGGTGGTGGGTCTTGACGAACCGACGATCCAGTCGTACCCAAAGACTATACTCGGCGCAAGTTGTAGATTACCAAAGCCTAACGACAACACTTGCTCAATATGCTTGTCCGATTACCAACCCACGGAAACGCTAAGGACCATCCCCTACTGCGGCCACTACTTCCACGGCCCGTGCATCGATGAGTGGCTTAAAATGAACGCCACGTGTCCATTGTGTCGGAATTTGCCGAAGGGGTCGTCGTCCTCTCACACTTCCCATTCTTCTCCGACGTCGGCTTCGTCTTTGATGTCCTTTTCCTCCGCTTAG 1158 49.91 MAAPGFFFLLFFCFIPRTVTSEIICRESSCLLGLEPVVRFPFRLNNTKQSRCGYGPDFVLSCDDRRQTTLNLPSSGRFVVTEIDYLSLTLSIEDPDECLPRRFLQNFSVANSPFLVDSFESITFVNCSNTDEATPYFRSISCLSGDNFTVKATKTAFIGEISSIPPSCRLISPVMVPITWGSGYFGINAYIKIRWTDPDCSSCERRGGDCGFTSSSGLNIGCSNLPTSGLPRAAKYGIILGAVIPGFLFIIGLCSCICAKMRLRAYQRGNTSVSGSAVALASVTVVGLDEPTIQSYPKTILGASCRLPKPNDNTCSICLSDYQPTETLRTIPYCGHYFHGPCIDEWLKMNATCPLCRNLPKGSSSSHTSHSSPTSASSLMSFSSA 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 27411199 27412801 - Bma007785.1 Bma12g00608 92034

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00608 385 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 361 IPR013083 -
Bma12g00608 385 PANTHER RING-H2 FINGER PROTEIN ATL20-LIKE 6 381 - -
Bma12g00608 385 SUPERFAMILY RING/U-box 307 358 - -
Bma12g00608 385 Pfam Wall-associated receptor kinase galacturonan-binding 25 94 IPR025287 GO:0030247
Bma12g00608 385 SMART ring_2 315 356 IPR001841 -
Bma12g00608 385 Pfam Ring finger domain 313 357 IPR001841 -
Bma12g00608 385 ProSiteProfiles Zinc finger RING-type profile. 315 357 IPR001841 -
Bma12g00608 385 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 6 381 - -
Bma12g00608 385 MobiDBLite consensus disorder prediction 361 385 - -
Bma12g00608 385 CDD RING-H2_PA-TM-RING 314 357 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00608 - - - bhj:120071243 340.117
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g01099 Bma-Chr2:52676708 Bma12g00608 Bma-Chr12:27411199 1.11E-47 dispersed
Bma05g00744 Bma-Chr5:43831706 Bma12g00608 Bma-Chr12:27411199 7.22E-13 dispersed
Bma12g00608 Bma-Chr12:27411199 Bma05g01188 Bma-Chr5:50980454 1.20E-16 dispersed
Bma12g00608 Bma-Chr12:27411199 Bma03g00018 Bma-Chr3:226201 9.42E-32 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g133 Blo02g01150 . Bda06g00147 . Bpe05g00694 Bpe07g00071 . . Cmo06g01042 Cmo16g00596 . . . . . Cpe14g00461 . . . . . . . . . . . . . . . Cone8ag0244 . . . . . . . . . . . . . . Bma12g00608 . . . . Cma16g00544 Car06g00858 . . . . . . . . . . . . . . . . . . Csa04g00658 Chy07g01153 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008451 2 1 1 1 2 1 2 1 1 1 0 0 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 3 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00608 Bma_Chr12 FPKM 0.990741 1.026006 1.729691 1.791675 0.0 0.0 0.0 11.534258 13.83415 8.407492