Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00613 ATTTTGGAAATGGAGAACTTGATCTCTTTGGTGAATAAAATTCAGAGAGCTTGCACGGCTCTAGGTGATCACGGAGAAGCTAGTGCATTGCCCACACTTTGGGATTCTTTGCCTGCGATTGCCGTTGTCGGTGGTCAGAGCTCAGGCAAGTCTTCTGTATTAGAAAGCATTGTCGGGAAGGACTTCTTACCTCGAGGATCTGGGATTGTTACTCGGCGGCCGCTTGTTTTGCAGCTTCATAAGATTGATGAAGGAAGTAGAGAATATGCTGAGTTCCTTCATCTTCAAAGGAAAAAATTCACTGATTTTGCGGCTGTCAGGAAGGAAATTCAGGATGAAACTGATCGAGAGACTGGCCGGTCTAAACAAATCTCCAGTGTTCCAATTCATCTCAGTATATATTCTCCAAATGGTAGGGTTAATTTCATATTGCATGATTGTATAGTTTTTCTTGTACATTCTCTAATTTTTATATCGTTCTTCCAATTTTTGGCAGTTGTCAACTTAACGCTCATTGATCTTCCTGGTCTCACAAAAGTTGCTGTTGATGGACAATCGGATAGCATTGTGATGGACATTGAGAATATGGTTCGCTCCTTTATTGAGAAGCCCAATTGTATTATTCTTGCTATATCACCAGCCAATCAAGATCTTGCTACATCAGATGCTATTAAAATCTCCCGTGAAGTTGATCCTACAGGGGAAAGGACATTTGGTGTCTTGACGAAGATTGATCTCATGGATAAGGGTACAGATGCAGTTGATATATTAGAAGGAAAATCTTATCGGCTAAAATTTCCATGGGTTGGTGTTGTTAACCGCTCACAAGCGGATATTAACAAGAATGTCGATATGATTGCTGCTCGACGTAGAGAGCGTGAATATTTTGCAACTACCCCAGAATACAAGCACCTTTCTAATAGAATGGGTTCTGAGCATCTAGCAAAGATGCTTTCAAAGCATCTAGAAACGGTGATCAAGTCCCGTATCCCTGGCATCCAGAGCCTTATCAACAAAACCATTGCTGAACTTGAAGCTGAACTGAGCCGTCTTGGAAAGCCTGTGGCTACCGACGCTGGAGGGAAACTGTATATGATTATGGAGATTTGTCGAATTTTTGATCAGAACTACAAAGAGCATCTTGATGGAGTCCGACCTGGGGGTGATAAAATTTACCACGTCTTTGATAATCAACTTCCTGCTGCTCTAAAAAGATTGCAGTTTGACAAGCAACTTTCGATGGAAAATATAAAGAAGCTTATCACCGAAGCTGATGGATATCAGCCACATCTAATAGCTCCTGAGCAAGGATACCGTCGCGTTCATGGATTGTTGAAGGATTTGGTTCACAAGGCTATCAAGGAGACTATAGAGTTGAAGCAATATCCTGGTCTTAGAACGGAGGTAGGAAATGCAGCCATTGAATCTCTTGACAGGATGAGGGATCAAAGCAAGAAGGCAACCCTCCAACTAGTTGACATGGAATGCAGTTACTTGACAGTGGATTTCTTCCGAAAGCTTCCTCAGGATGTTGAGAAGGGTGGCAACCCCACCCACTCAATTTTTGACCGATACAATGATTCCTATCTCAGACGCATTGGAACAACGGTTTTGTCGTATGTAAATATGGTCTCTGCAACTTTACGCAACTCCATTCCGAAGTCCATCGTTTATTGTCAAGTGCGAGAAGCTAAACGAAGCCTGCTCGATCATTTCTTCACTGAATTGGGTAAATTAGAGCAAAAGCGACTGTCGTCTCTGTTGAACGAGGACCCAGCTGTGATGGAGCGGCGAATAGCTCTCGCAAAGAGGCTGGAGCTGTACAGAAGTGCGCAATCAGAAATCGATACGGTTGCGTGGTCTAAGTAG 1869 42.86 ILEMENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLHKIDEGSREYAEFLHLQRKKFTDFAAVRKEIQDETDRETGRSKQISSVPIHLSIYSPNGRVNFILHDCIVFLVHSLIFISFFQFLAVVNLTLIDLPGLTKVAVDGQSDSIVMDIENMVRSFIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDLMDKGTDAVDILEGKSYRLKFPWVGVVNRSQADINKNVDMIAARRREREYFATTPEYKHLSNRMGSEHLAKMLSKHLETVIKSRIPGIQSLINKTIAELEAELSRLGKPVATDAGGKLYMIMEICRIFDQNYKEHLDGVRPGGDKIYHVFDNQLPAALKRLQFDKQLSMENIKKLITEADGYQPHLIAPEQGYRRVHGLLKDLVHKAIKETIELKQYPGLRTEVGNAAIESLDRMRDQSKKATLQLVDMECSYLTVDFFRKLPQDVEKGGNPTHSIFDRYNDSYLRRIGTTVLSYVNMVSATLRNSIPKSIVYCQVREAKRSLLDHFFTELGKLEQKRLSSLLNEDPAVMERRIALAKRLELYRSAQSEIDTVAWSK 622
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 27434445 27438983 + Bma007790.2 Bma12g00613 92039

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00613 622 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 339 IPR027417 -
Bma12g00613 622 PRINTS Dynamin signature 213 231 IPR022812 -
Bma12g00613 622 PRINTS Dynamin signature 255 274 IPR022812 -
Bma12g00613 622 PRINTS Dynamin signature 62 79 IPR022812 -
Bma12g00613 622 PRINTS Dynamin signature 37 55 IPR022812 -
Bma12g00613 622 PRINTS Dynamin signature 163 180 IPR022812 -
Bma12g00613 622 PRINTS Dynamin signature 232 248 IPR022812 -
Bma12g00613 622 Pfam Dynamin central region 252 438 IPR000375 -
Bma12g00613 622 Gene3D - 4 384 IPR027417 -
Bma12g00613 622 PANTHER DYNAMIN-LIKE PROTEIN 1E 164 621 - -
Bma12g00613 622 CDD DLP_1 36 331 IPR001401 GO:0003924|GO:0005525
Bma12g00613 622 SMART GED_2 525 618 IPR003130 GO:0003924|GO:0005525
Bma12g00613 622 Pfam Dynamin GTPase effector domain 526 618 IPR003130 GO:0003924|GO:0005525
Bma12g00613 622 PANTHER DYNAMIN-LIKE PROTEIN 1E 5 146 - -
Bma12g00613 622 SMART dynamin_3 4 282 IPR001401 GO:0003924|GO:0005525
Bma12g00613 622 Gene3D Dynamin, middle domain 438 598 - -
Bma12g00613 622 PANTHER DYNAMIN 164 621 IPR022812 -
Bma12g00613 622 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 34 331 IPR030381 GO:0005525
Bma12g00613 622 ProSiteProfiles GED domain profile. 530 622 IPR020850 -
Bma12g00613 622 Pfam Dynamin family 40 244 IPR045063 -
Bma12g00613 622 ProSitePatterns Dynamin-type guanine nucleotide-binding (G) domain signature. 63 72 IPR019762 -
Bma12g00613 622 PANTHER DYNAMIN 5 146 IPR022812 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00613 - - - cit:102606764 1060.44
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma05g00879 Bma12g00613 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00881 Bma-Chr5:46598618 Bma12g00613 Bma-Chr12:27434445 0 dispersed
Bma06g01258 Bma-Chr6:49703305 Bma12g00613 Bma-Chr12:27434445 0 dispersed
Bma12g00613 Bma-Chr12:27434445 Bma12g00330 Bma-Chr12:5413843 4.36E-87 dispersed
Bma12g00613 Bma-Chr12:27434445 Bma05g00879 Bma-Chr5:46509099 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g146 . . Bda06g00152 Bda08g00462 Bpe05g00697 Bpe07g00066 . . . . . . . . . Cpe14g00456 . . . . . . . . Cla07g01094 . Cec07g1258 Cco07g1235 . . Cre07g1519 . . Cone6ag0857 Cone9ag0859 . . . Cme07g01570 . . . . . . Bma05g00879 Bma12g00613 . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00667 Chy07g01144 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000261 5 7 3 6 5 5 6 5 5 5 4 4 4 6 5 6 4 8 5 5 5 5 5 5 5 4 4 8 5 5 154
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00613 Bma_Chr12 FPKM 0.55768 1.085492 1.2012 1.525188 4.987046 4.130731 4.127049 2.478813 2.979764 2.331884