Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00615 ATGGAGATTGCCTCCGTTCTGACTCTTGCTTTCTCATCTCAGCCTCTTTATATAGCGGCAATCTTCACCTTCCTCTGTTTTTCGTTCGTCATTTTTGCATTCCGATCAGGTTCAATTCCGTTCGTTGGGAAAAAACAATCATCCGTATCATCCACTGGTTTATCTGAAAGTTCGGCTGGTGATAAGGGCTGTAATTGCAGCTGTTCTTGTAATGGTTCAGTGGTTCTTGGAGGTTCTGACTTTGCGGCGTCTGCATCTTCAATGAGTTTAACTTCGAGGTACTTGAACGGTGGTGTGGTAGAAATGTTGGAAGCTCCGAAGATGGTGACAGACAGGCAAACGGGTGCCTCGATGATGGAGCAACTTGTGCCGGAGATTACTACGCATGCACTCAGTTATTTGGATTATCCTAGTTTATGTCGCCTCTCTATGACTAATTCTTTGATGCGCAAGGCAGCGAACGATGACAACGCATGGAAAGCACTTTATCACAAGGACTTCACACTGGAACAGGATTGTGTAACTCCAGTAAATGGGTGGAAAGCTTACTATGCTGCGACAAGAGCAATTGTAAATATCAACGCAGAATTCTTTGACATCGTCAGACAGCGTTCGATTTCTGAAATGAGTCGCTTTTGGCGAAATGCAGATTATGTCAAGTGCATTAATGCTTCAGGGGAATTCTTTTCTGGTTATAATGCAGTGATGAGAAGTTGGCAGCTAGCGTTTGCTTGGGAGCAAGGGTTCAACTTGCAAATTCGTGATGTACGGGCTCGAGTATTTCCAGACATGGCTTGGGTTACCATGAAAACCTACGTTGACATGGACACTGGGCCATTCAATGTGACTAATGTCTTTGAGTTTCACAATGACCGATGGTACATGGTGCATCATCATTGCTCAGTGATGCTCATTGATGGGGAGATGGATCAACAGATTGTTCATGGG 948 44.51 MEIASVLTLAFSSQPLYIAAIFTFLCFSFVIFAFRSGSIPFVGKKQSSVSSTGLSESSAGDKGCNCSCSCNGSVVLGGSDFAASASSMSLTSRYLNGGVVEMLEAPKMVTDRQTGASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDCVTPVNGWKAYYAATRAIVNINAEFFDIVRQRSISEMSRFWRNADYVKCINASGEFFSGYNAVMRSWQLAFAWEQGFNLQIRDVRARVFPDMAWVTMKTYVDMDTGPFNVTNVFEFHNDRWYMVHHHCSVMLIDGEMDQQIVHG 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 27449527 27451398 + Bma030507 Bma12g00615 92041

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00615 316 Gene3D - 103 160 - -
Bma12g00615 316 Pfam SnoaL-like domain 191 303 IPR037401 -
Bma12g00615 316 Gene3D - 180 312 - -
Bma12g00615 316 SUPERFAMILY F-box domain 116 194 IPR036047 GO:0005515
Bma12g00615 316 ProSiteProfiles F-box domain profile. 116 162 IPR001810 GO:0005515
Bma12g00615 316 PANTHER F-BOX PROTEIN SKIP8 11 316 IPR044260 -
Bma12g00615 316 SUPERFAMILY NTF2-like 185 303 IPR032710 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00615 - - - mcha:111008096 452.981
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01835 Bma-Chr1:66124841 Bma12g00615 Bma-Chr12:27449527 1.06E-11 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g156 . Blo03g00257 Bda06g00156 . . Bpe07g00062 . . . Cmo16g00590 . . . . . Cpe14g00453 . . . . . . . . Cla07g01091 Cam07g1407 Cec07g1254 Cco07g1231 Clacu07g1156 Cmu07g1135 Cre07g1515 . . Cone6ag0862 Cone9ag0864 Lsi07g01122 . . Cme07g01541 . . . . . . . Bma12g00615 . . . . Cma16g00538 . . . . . . . . . . . . . . . . . . . Csa04g00672 Chy07g01138 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007131 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 2 2 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00615 Bma_Chr12 FPKM 8.094183 7.720255 2.284069 2.618773 10.240169 9.075455 11.646765 0.46519 0.310174 0.158904