Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00621 TCCTCGAAAATGCCAGAACCGGAGCTCGACGGCGCGGCACACTTTCCTCTCAAAACGATGGTCGATGATAGGGACCCGCTCTTGGACTTTGATGTCGACATGGGGAGCCCGTGGCCGTTGGATCAGACCGCTCCGATCCTTATTACTTCCTCCGATCAGCCTTGCTCTCCGCTCTGGGCTTTCTCCGACGGGGAAGAAGTTGGGGATGGAAAACTCCATGCCCATGCTCGCTCAGTGCACGGTAAGTTTCGTTTCTTCCTGCCGATTCGACGTTTTCTTATATCGATTTTCTTTTCGTTTTCGATTCACTCATTTGGATTATATTTTCTAAATTCAGGCATAAATAGTTTGAATTCGGCGACGGAAAAACCAACCCAGAACATTGAAACAAGACTGCTCCAATTACCCCCTCTGTGGGGACTTAAATCAACGGAGAATCCAGATGGGTACTGCTTGATCAAAGAGAAAATGACTCAAGCCCTTAGATACTTGAAAGAATTGACCGACCAACACGTTCTAGCTCAGGTCTGGGCGCCAGTCAAGAGCGGGGGACGATATGTGCTGACAACTCTCGAGCAACCCTTCGTTCTCGACGCCCAAAGCAATGGACTTCATCAGTATCGAATGGTCTCTCTGATGTACATGTTCTCGGTCGATGGCGAAACTGACGGAGTTCTTGGACTTCCCGGCCGTGTATTCCAGCAGCAATTGCCGGAATGGACTCCAAATGTGCAGTTTTACTCGAGCAAAGAGTATCCGAGAAGAAATCACGCTCTTCACTACAACGTCCAGGGAACTTTGGCTTTGCCGGTCTTCGAATCGTCCGGCCAATCCTGTATTGGTGTACTCGAGCTCATCATGAACTCTCCCAAAATCAATTATGCTCCTGAGGTTGATAAAGTCTGTAAAGCTCTTGAGGCTGTCAACTTGAAAAGCTCAGAAATTTTGGATCATCCAAACACACAGATATGCAATGAAGGTCGCCAAAACGCGTTGGCTGAAATTTTGGAGGTTCTTACAGTTGTATGTGAAATTCACAAATTACCACTGGCTCAAACCTGGGTTCCTTGCAAGCACGGGAGCGTTCTTGCCAATGGCGGTGGTTTAAAGAAGAGCTGCTCTAGCTTTGATGGCAGTTGCAGAGGACAAGTCTGCATGTCTGCAACTGATATAGCGTCTTATATTGTCGATGCTCATGCTTGGGGTTTTCGAGAGGCTTGTCTTGAACATCATTTGCAGAAAGGCCAAGGAGTGGCTGGCCGGGCGTTTTTGTCCCAAAGCTCGTGTTTCTCCATGGATATAACCCAGTTCTGCAAGACGGAATACCCTTTAGTGCACTATGCACGAATGTTTGAGTTAAAGAGCTGTTTTGCAGTCTGCCTACGGAGCAGTTTTACCGGCGAAGATGATTATATTCTTGAGTTTTTCCTCCCATCCGTCGTAAAAGAATATTACGAACAACTGACTTTGTTGGGCACGATATTGGCTACGATGAAACACCATTTTCACACGCTCAAGGTTGCATCGGGAATCAAGTTCGAAGAGGGGGAAATTCTCGTAGAAATCATAGAAGCTTCGACGGATGGCGGACTAAACTCTAGATTTGAATATATTCGAATACCTCAATCTGTCGAATTGCCACCTGAATCTGATATTGCTCCTAATGGTGGAGAGATGTTTGGATTTAATCCAACAAAACAGAAGTTCCTGGCCGGTTGTGATGATGACGAAAACAATACTGGTCCGGAGAGTAAAACACGTGTTCCTTCTCCTCCGAAAGACGCTAGAAAGAGATTGGAGAGAAAACGAGGGAAAACAGAGAAATCGATAAATTTAGATGTTCTTCAACAGTATTTCACCGGGAGTCTTAAAGATGCTGCAAAGAGCCTTGGAGTTTGCCCGACAACGATGAAGCGCATCTGTCGGCAGCATGGAATATCCCGCTGGCCATCTCGGAAGATCAACAAGGTTAATCGATCACTCTCTAAGCTAAAACGAGTAATTGAATCCGTCCATGTTGCCGAAGGAGCATTTGGTTCGACCCCTCTCACCACAACCACTAATTCTCCCCGATTTTCCCCAAATGGACCAAATCAGCGTAACTCACCCATCCGTGAGCCGGGTGATCATCATGGCGAAAAAAAAGAAGTATCACCAGGAAAAGACCTACCATCTTGGATGGACGACGGATTCGTTGGAGGGACATTGCGTTTTGACGAATATATTCACGACAAATGTGGCCTCGGGCCGAAGATTTGTAGACATTCGAACAAGTCCCAAACAAAGAGTGGGTCGAGGGAAGAGAGTGGAGGGACTCCTACTTCTCATGGCTCTTTCCAAGGTAGTCCTGCTAATGAAAGCATTCCAGCCAAGGATCCAGTTGTTTTCCCCTATCATGAGCAACCCATCACAGGAGTGGATTCCCCCGGTAACCTCAATCCACCAGATTCATATCTGGTTCATGATCTACTTCGGGTAACAGAAGTCGAAGAACCGTTTGGAGCAATGCTTATAGAAGATGCCGGAAGTTCAAAAGATTTAAGAAATCTTTGTCCATCTGCAGCAGATGCCGTTTTGGACGAGCACATTCCCGAATCTTATTGGCCACATTTTCCCGGTTCAGCATCAGCACAATTCGTCGGTATTGCAGGTCAAGCAGCGGCAAATGACGGAACGAGGCAAGAAACAAAGAGGACGACGATCAAGGCGACGTATAAAGAAGATATCATAAGATTTCGCATACCCTTGAGCTCCGGCGTAGTGGAGTTAAAAGAAGAAGTGGCTAAGAGGCTGAAACTGGAGGTGGGTAATTTTGATATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGATTTAA 4311 47.74 SSKMPEPELDGAAHFPLKTMVDDRDPLLDFDVDMGSPWPLDQTAPILITSSDQPCSPLWAFSDGEEVGDGKLHAHARSVHGKFRFFLPIRRFLISIFFSFSIHSFGLYFLNSGINSLNSATEKPTQNIETRLLQLPPLWGLKSTENPDGYCLIKEKMTQALRYLKELTDQHVLAQVWAPVKSGGRYVLTTLEQPFVLDAQSNGLHQYRMVSLMYMFSVDGETDGVLGLPGRVFQQQLPEWTPNVQFYSSKEYPRRNHALHYNVQGTLALPVFESSGQSCIGVLELIMNSPKINYAPEVDKVCKALEAVNLKSSEILDHPNTQICNEGRQNALAEILEVLTVVCEIHKLPLAQTWVPCKHGSVLANGGGLKKSCSSFDGSCRGQVCMSATDIASYIVDAHAWGFREACLEHHLQKGQGVAGRAFLSQSSCFSMDITQFCKTEYPLVHYARMFELKSCFAVCLRSSFTGEDDYILEFFLPSVVKEYYEQLTLLGTILATMKHHFHTLKVASGIKFEEGEILVEIIEASTDGGLNSRFEYIRIPQSVELPPESDIAPNGGEMFGFNPTKQKFLAGCDDDENNTGPESKTRVPSPPKDARKRLERKRGKTEKSINLDVLQQYFTGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVHVAEGAFGSTPLTTTTNSPRFSPNGPNQRNSPIREPGDHHGEKKEVSPGKDLPSWMDDGFVGGTLRFDEYIHDKCGLGPKICRHSNKSQTKSGSREESGGTPTSHGSFQGSPANESIPAKDPVVFPYHEQPITGVDSPGNLNPPDSYLVHDLLRVTEVEEPFGAMLIEDAGSSKDLRNLCPSAADAVLDEHIPESYWPHFPGSASAQFVGIAGQAAANDGTRQETKRTTIKATYKEDIIRFRIPLSSGVVELKEEVAKRLKLEVGNFDMRERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERERI 1436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 27467195 27472405 + Bma007797.1 Bma12g00621 92047

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00621 1436 Gene3D - 888 959 - -
Bma12g00621 1436 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 114 943 - -
Bma12g00621 1436 MobiDBLite consensus disorder prediction 589 606 - -
Bma12g00621 1436 SUPERFAMILY CAD & PB1 domains 890 947 - -
Bma12g00621 1436 MobiDBLite consensus disorder prediction 679 702 - -
Bma12g00621 1436 MobiDBLite consensus disorder prediction 571 606 - -
Bma12g00621 1436 MobiDBLite consensus disorder prediction 754 785 - -
Bma12g00621 1436 Coils Coil 940 1435 - -
Bma12g00621 1436 Pfam RWP-RK domain 610 657 IPR003035 -
Bma12g00621 1436 MobiDBLite consensus disorder prediction 679 726 - -
Bma12g00621 1436 ProSiteProfiles RWP-RK domain profile. 589 677 IPR003035 -
Bma12g00621 1436 MobiDBLite consensus disorder prediction 704 722 - -
Bma12g00621 1436 MobiDBLite consensus disorder prediction 981 1436 - -
Bma12g00621 1436 MobiDBLite consensus disorder prediction 750 791 - -
Bma12g00621 1436 PANTHER PROTEIN NLP8 114 943 IPR045012 GO:0003700
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00621 - - - csv:101212500 1096.65
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma05g00891 Bma12g00621 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00770 Bma-Chr3:7028201 Bma12g00621 Bma-Chr12:27467195 6.25E-09 dispersed
Bma06g01446 Bma-Chr6:51167442 Bma12g00621 Bma-Chr12:27467195 2.88E-33 dispersed
Bma08g00389 Bma-Chr8:9461394 Bma12g00621 Bma-Chr12:27467195 3.88E-06 dispersed
Bma11g00192 Bma-Chr11:1717751 Bma12g00621 Bma-Chr12:27467195 2.38E-163 dispersed
Bma12g00621 Bma-Chr12:27467195 Bma05g00891 Bma-Chr5:46706732 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g191 Blo02g01163 Blo03g00261 . Bda08g00451 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma05g00891 Bma12g00621 . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00684 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma05g00891 BCT 175 968 NLP Transcription Factor Family AT1G64530 52.1 9.6e-215 743.4
Bma12g00621 BCT 208 941 NLP Transcription Factor Family AT1G64530 51.3 2.5e-191 665.6
Bma05g00891 BCT 254 968 NLP Transcription Factor Family AT4G24020 54.2 3.1e-197 685.3
Bma12g00621 BCT 287 941 NLP Transcription Factor Family AT4G24020 51.7 6.4e-171 597.8
Bma02g00962 BCT 152 923 NLP Transcription Factor Family AT3G59580 53.0 5.6e-207 718.0
Bma06g01446 BCT 94 227 NLP Transcription Factor Family AT3G59580 65.7 6.3e-41 166.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003291 3 3 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 7 2 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58121 PF02042 RWP-RK 1.70E-25 No_clan Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00621 Bma_Chr12 FPKM 0.793837 1.060341 6.638961 6.5343 2.020916 2.220927 2.278504 1.711831 1.670018 1.75628