Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00623 ATGCCTGGTTTAGTCTCTGTTAAAACTCCGCCTCTCCGGATCTCCGTCCCCAACACTCCCACTCAGATCCAGAGACCCGACCCTGCTAACAACAAGCCTTCATCACCTCTACCCAGAAAACAAGTCTCCCCATCTCCTTCGGGATCCAAGTCGTCGCCGGATCCGAAGAAAAAGCTGCAACCCGGAAGCCCGGTACCCAGTCCCGTACCGCTCGATTCCTCGCTCGACAATCCGGATCTCGGCCCCTTCCTACTCAAGCTCGCCCGTGACACTATTGCTTCAGGCGAAGGCCCAAACAAGGCCTTAGACTACGCACTCCGAGCCTCCAAATCCTTAGAGCGATGCGCGATCGATGGAGAGCCGAGCCTCAACTTGGCTATGAGCCTGCACGTTCTTGCAGCCATTTACTGTAGTTTGGGAAGGTTCGAGGACGCGGTTCCGATTCTGGAGCAGGCGATTCAAGTCCCAGTTGTTTCTCGCGGTTCAGATCATGCTCTGGCTGCTTTCTCTGGGTATATGCAATTGGGAGATACATATTCAATGCTTGGTCAAATTGAGCGCTCGATCGCTTGCTATGAAGATGGATTGAAGATTCAGATCGAGACGCTGGAAGAGACGGATCCCAGAGTGGGAGAGACTTGCAGGTACTTATCTGAGGCCCATGTTCAGGCTATGCAGTTCGACAGAGCAGAAGAGTTGTGCAAGAAAACACTCGAAATCCATCGTGCCCACAGCGAATCAGCATCCCTCGAAGAGGCATCAGACCGCCGACTTATGGCCGTCATATGCGAAGCGAAAGGCGACTACGAGTCGGCCCTCGAGCACCTCGTGCTTGCCAACATGGCAATGATTTCGAACGGACAAGACAACGAAGTTGCCTCAATCGATGTCAGCATAGGAAACATTTACATGTCTCTTTGTCGCTACGATGAGGCTGTCTTTTCATACCAGAAGGCCCTCACTGTCTTCAAAGCATCGAAAGGCGACAACCACCCTTCAGTTGCCTCCGTTTTCATCCGCCTCGCCGATATATATCTCAAAACGGGAAAGCTTCGAGAGTCGAAATCTTATTGCGAAAATGCTCTGAGGATTTATTCGAAGCCGGTGCCTGGAACTACGTCGGAAGAAATCGCTGGTGGGTTGACTGAAATATCTGCTATTTATGAATCTGTGGATGAGCCCGGTGATGCTCTGAAGCTTTTGCAGAAGGCAATGAAGCTGTTAGAGGATAAACCAGGACAGCAAAGCACGATTGCCGGGATTGAAGCTCGAATGGGGGTGATGTTCTACGCGGTTGGGAGGTATGAAGAGGCAAGAAACTCTTTAAAGAGCGCCATAGCAAAACTGAGAGCCAGTGGGGAGAGAAAATCTGCCTTCTTTGGGGTTGTACTGAATCAAATGGGATTGGCTTCCGTTCAACTGTTCAAGATAGATGAGGCTGTTGAGCTTTTTGAAGAAGCAAGAGGAATACTCGAAGTCGAATGCGGCCCCTGTCATCACGATACCCTCGGAGTTTACAGCAATCTCGCAGCCACCTATGATGCTATGGGCAGAGTGGAGGATGCAATTGAAATATTGGAGAATGTTCTTAAACTGAGAGAAGAAAAGCTCGGAATTGCAAATCCAGATTTCGAAGACGAGAAGAGGAGATTAGGGGAGCTCCTGAGAGAAGCAGGCAGAACCAGAAACAGAAAAGCGAAATCCCTCGGAAACCTCATCGACCCGAACTCGAAGAAGACGAAGAAAGAGGCAACGAAGAAGTGGGCAGGCCTAGGATTCAGATTCTGA 1788 50.34 MPGLVSVKTPPLRISVPNTPTQIQRPDPANNKPSSPLPRKQVSPSPSGSKSSPDPKKKLQPGSPVPSPVPLDSSLDNPDLGPFLLKLARDTIASGEGPNKALDYALRASKSLERCAIDGEPSLNLAMSLHVLAAIYCSLGRFEDAVPILEQAIQVPVVSRGSDHALAAFSGYMQLGDTYSMLGQIERSIACYEDGLKIQIETLEETDPRVGETCRYLSEAHVQAMQFDRAEELCKKTLEIHRAHSESASLEEASDRRLMAVICEAKGDYESALEHLVLANMAMISNGQDNEVASIDVSIGNIYMSLCRYDEAVFSYQKALTVFKASKGDNHPSVASVFIRLADIYLKTGKLRESKSYCENALRIYSKPVPGTTSEEIAGGLTEISAIYESVDEPGDALKLLQKAMKLLEDKPGQQSTIAGIEARMGVMFYAVGRYEEARNSLKSAIAKLRASGERKSAFFGVVLNQMGLASVQLFKIDEAVELFEEARGILEVECGPCHHDTLGVYSNLAATYDAMGRVEDAIEILENVLKLREEKLGIANPDFEDEKRRLGELLREAGRTRNRKAKSLGNLIDPNSKKTKKEATKKWAGLGFRF 595
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 27479182 27481674 - Bma007799.1 Bma12g00623 92049

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00623 595 Gene3D Tetratricopeptide repeat domain 106 279 IPR011990 GO:0005515
Bma12g00623 595 ProSiteProfiles TPR repeat profile. 503 536 IPR019734 GO:0005515
Bma12g00623 595 Pfam MalT-like TPR region 130 281 IPR041617 -
Bma12g00623 595 Pfam Tetratricopeptide repeat 463 535 - -
Bma12g00623 595 Pfam Tetratricopeptide repeat 292 366 - -
Bma12g00623 595 PANTHER - 1 594 - -
Bma12g00623 595 ProSiteProfiles TPR repeat profile. 293 326 IPR019734 GO:0005515
Bma12g00623 595 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 1 594 - -
Bma12g00623 595 Gene3D Tetratricopeptide repeat domain 280 460 IPR011990 GO:0005515
Bma12g00623 595 SUPERFAMILY TPR-like 121 274 IPR011990 GO:0005515
Bma12g00623 595 SUPERFAMILY TPR-like 298 533 IPR011990 GO:0005515
Bma12g00623 595 MobiDBLite consensus disorder prediction 12 56 - -
Bma12g00623 595 SMART tpr_5 419 452 IPR019734 GO:0005515
Bma12g00623 595 SMART tpr_5 378 411 IPR019734 GO:0005515
Bma12g00623 595 SMART tpr_5 503 536 IPR019734 GO:0005515
Bma12g00623 595 SMART tpr_5 126 159 IPR019734 GO:0005515
Bma12g00623 595 SMART tpr_5 335 368 IPR019734 GO:0005515
Bma12g00623 595 SMART tpr_5 169 202 IPR019734 GO:0005515
Bma12g00623 595 SMART tpr_5 293 326 IPR019734 GO:0005515
Bma12g00623 595 SMART tpr_5 461 494 IPR019734 GO:0005515
Bma12g00623 595 SMART tpr_5 211 244 IPR019734 GO:0005515
Bma12g00623 595 MobiDBLite consensus disorder prediction 1 76 - -
Bma12g00623 595 Gene3D Tetratricopeptide repeat domain 461 571 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00623 - - - csv:101207194 957.207
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma05g00892 Bma12g00623 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g00623 Bma-Chr12:27479182 Bma14g01492 Bma-Chr14:30172635 0 dispersed
Bma04g00915 Bma-Chr4:12556656 Bma12g00623 Bma-Chr12:27479182 0 transposed
Bma09g00600 Bma-Chr9:43171755 Bma12g00623 Bma-Chr12:27479182 6.45E-53 transposed
Bma12g00623 Bma-Chr12:27479182 Bma05g00892 Bma-Chr5:46717305 4.76E-65 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g193 . Blo03g00263 . Bda08g00450 Bpe05g00710 . . . . Cmo16g00575 . . . . . Cpe14g00445 . . . . . . . . Cla07g01078 Cam07g1422 Cec07g1234 Cco07g1213 Clacu07g1138 Cmu07g1121 Cre07g1498 . . . . . . . Cme07g01520 . . . . . . Bma05g00892 Bma12g00623 . . . . Cma16g00526 . . . . . . . . . . . . . . . . . . . Csa04g00686 Chy07g01123 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001869 2 3 3 3 2 2 3 2 2 2 2 2 2 2 2 3 2 2 3 2 3 2 2 2 2 2 2 3 2 2 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00623 Bma_Chr12 FPKM 29.436981 31.556602 30.61754 34.85342 22.492027 21.007843 23.990515 42.316601 40.636616 41.775944