Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00624 GGTGAGGCACTTATAAGCTTTAGGACATCAATAGTAAATTTCGATAGTGTTCTACTCCGCTGGAGACCAGAGGATTCTGACCCATGCAATTGGAAAGGAGTTACGTGCGATTCAAACACGAAGAGAGTGACAATATTGAATCTCGAAAATCACAAACTGAGTGGATCAATCTCATCTGACCTTCGGAAGCTCGATCAATTGGAAATTTTAATTCTTTCCGGCAATAACTTCTATGGGATGATTCCGGCCGAACTGGGAAATTGCTCGCAGTTGAAGGGACTATTCTTGGAGCGTAATTACTTGAGTGGATCGATACCGAGTGAATTGGGAAATCTTATAGAACTGGAGAATCTAGACATTTCAAGCAATTCTCTGAGCGGAAATATCCCGGTGTCACTTGGGAAATTGGAGAAGCTAACGACGTTCAATGTGTCGACCAACTTTTTGATCGGACCAATTCCTTATGATATCAACTTTACGGAGAGCTCCTTCGTTGGAAACCGTGGTTTGTGCGGGAGACAGATTGGTGTGAGTTGCAAAAACGAGAGTGGAGGATCGGGATCGAACTCCCAATCTCCAAACTTCGCCCAAGATCTAGGTGGGAAAAGGAAAGACTCCGGTCGCCTTCTTATAAGTGCATCGGCAACTGTCGGTGCTCTTCTTCTGGTGGCGCTTATGTGCTTTTGGGGATGCTTTTTGTATAAAAAGTTCGGTAAAAGCGAAAGTAAAGGTCTAGCCGTCTATGTCTCTGGAGGAGCGTCGATTGTGATGTTTCATGGAGACTTGCCATATTCTTCCAAAGACATAATCAAGAAATTGGAAACTTTGAACGATGAACACATAATCGGCTGTGGGGGCTTCGGAACGGTCTATAAGCTTGCAATGGACGACGGCAATGTATTCGCTTTGAAAAGAATTATAAAGATGAACGATGGGTTTGATCGTTTCTTTGAGAGGGAACTCGAGATTCTCGGAAGCATAAAACACCGCTATCTCGTGAATTTACGGGGCTACTGCAATTCTCCTACGTCAAAACTGCTCATTTATGATTTTCTCTCCGGCGGTAGTCTTGACGAAGCCCTTCACGAAAGATCTGAACTCCTCGACTGGGATGCGCGGTTAAATATCATCTTGGGAGCGGCAAAAGGGTTATCCTACTTGCACCATGATTGCTCGCCGAGGATCATTCATCGGGACATAAAATCAAGCAACATTTTACTTGATGGTAATCTAGAGGCAAGAGTTTCTGACTTTGGACTGGCCAAGCTTTTGGGGGATGAAGAATCTCATATTACAACCATTGTTGCTGGAACATTTGGTTATCTAGCTCCCGAGTATATGCAGAGCGGTAGAGCGACAGAAAAGACGGACGTTTATAGTTTCGGCGTGCTGGTGCTCGAAGTGTTGAGTGGAAAGCGGCCGACCGATGCAACATTCATCGAGAAAGGCCTGAACATTGTTGGCTGTTTAAATTTTCTGGTCAACGGAGATCGGCAACGAGAGATAGCCGATCCACAATGCGAGGGAGTGCAGGCGGAGAGTCTAGACGCCTTGCTCTCGGTAGCCATCCAGTGCGTTTCTTCGACTCCGGAAGACAGGCCGACGATGCACAGAGTAGTCCAAATGCTCGAGTCTGAGGTCATGACCCCGTGCCTAAGCGACTTCTACGATTCAAACTCGGACTAA 1686 45.91 GEALISFRTSIVNFDSVLLRWRPEDSDPCNWKGVTCDSNTKRVTILNLENHKLSGSISSDLRKLDQLEILILSGNNFYGMIPAELGNCSQLKGLFLERNYLSGSIPSELGNLIELENLDISSNSLSGNIPVSLGKLEKLTTFNVSTNFLIGPIPYDINFTESSFVGNRGLCGRQIGVSCKNESGGSGSNSQSPNFAQDLGGKRKDSGRLLISASATVGALLLVALMCFWGCFLYKKFGKSESKGLAVYVSGGASIVMFHGDLPYSSKDIIKKLETLNDEHIIGCGGFGTVYKLAMDDGNVFALKRIIKMNDGFDRFFERELEILGSIKHRYLVNLRGYCNSPTSKLLIYDFLSGGSLDEALHERSELLDWDARLNIILGAAKGLSYLHHDCSPRIIHRDIKSSNILLDGNLEARVSDFGLAKLLGDEESHITTIVAGTFGYLAPEYMQSGRATEKTDVYSFGVLVLEVLSGKRPTDATFIEKGLNIVGCLNFLVNGDRQREIADPQCEGVQAESLDALLSVAIQCVSSTPEDRPTMHRVVQMLESEVMTPCLSDFYDSNSD 561
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 27486608 27489555 + Bma007800.1 Bma12g00624 92050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00624 561 Pfam Protein kinase domain 278 541 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma12g00624 561 PANTHER RECEPTOR-LIKE PROTEIN 55 10 561 - -
Bma12g00624 561 ProSiteProfiles Protein kinase domain profile. 276 548 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma12g00624 561 ProSitePatterns Serine/Threonine protein kinases active-site signature. 395 407 IPR008271 GO:0004672|GO:0006468
Bma12g00624 561 Gene3D Phosphorylase Kinase; domain 1 252 351 - -
Bma12g00624 561 ProSitePatterns Protein kinases ATP-binding region signature. 282 308 IPR017441 GO:0005524
Bma12g00624 561 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FEI 1 10 561 IPR031071 GO:0004672|GO:0005524|GO:0030244
Bma12g00624 561 SUPERFAMILY Protein kinase-like (PK-like) 266 550 IPR011009 -
Bma12g00624 561 SUPERFAMILY L domain-like 3 160 - -
Bma12g00624 561 Pfam Leucine rich repeat N-terminal domain 2 37 IPR013210 -
Bma12g00624 561 Gene3D Ribonuclease Inhibitor 1 180 IPR032675 -
Bma12g00624 561 SMART serkin_6 276 548 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma12g00624 561 Gene3D Transferase(Phosphotransferase) domain 1 352 551 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma05g00895 Bma12g00624 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g01126 Bma-Chr7:45034231 Bma12g00624 Bma-Chr12:27486608 1.22E-85 dispersed
Bma12g00624 Bma-Chr12:27486608 Bma06g01441 Bma-Chr6:51107230 3.54E-101 dispersed
Bma08g00212 Bma-Chr8:2621428 Bma12g00624 Bma-Chr12:27486608 1.61E-54 transposed
Bma12g00624 Bma-Chr12:27486608 Bma05g00895 Bma-Chr5:46755243 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66815 PF00069 Pkinase 1.40E-46 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00624 - - jre:109001091 932.169