Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma12g00627 ATGCTGTTGATGCGGAGAGGATTAGCTTGCTGCTCCATTGATAGAGATGCCAGCTTCGACTTCGACGACCAAGACAGAATAACGACATATGATGGTCTTGAGAGCTGCATTCTCAACCATCAAACTTATGAAAATGAAAGCAGCACGAGCAGAGGAGACGAATGTGCATCCGAGTCGATGGAGGATTACGATTCAAGCTGTTCTTCAAGCAAAGATGCTTCTGGTTCCTTCTCATTCAAATGGTTACCAACTAAGAAGGACGAGCATCCTATTGCTGAATGGGATGAGTCAGAAAGTCCACCGCATTTTCACTACAGAGAGAAACCTTCTAAATCTGTTCAGGTTTCAGATGTGGATGCCATGAAAGAAAAATATGCAAAATTATTGCTGGGGGAAGATGTAACAGGAGGCAAGAAAGGCCTCACCACTGCGCAAGCATTGTCCAATGCCATTACTAATCTAGCAGTAACCATTTTTGGCGAGCTGTGGAAATTGGAACCGCTTCATGAAGAAAGAAAAGCAAAATGGCAGAGAGAAATGAGTTGGTTGCTTTCTCCAACTAATTATATGGTTGAATTGATTCCCACCAAGCAGAATGGTGCCAATGGTGGAATCTTGGAGATAATGACACCAAAAATACGCAGGGACATCCACATGAATCTTCCAGCACTTCAGAAGTTGGACTCCATGCTTATTGATACGTTGGATTCAATGGTGAATACAGAGTTTTGGTATGTAGAAGGAGGTAGCCGAGCTGAAGGAAGAAGCAAGAGTGGATCAAATAGCAAGAAATGGTGGCTTCCATCACCGCAGATGCCACCTTCTGGTCTCTCTGAGGCTGAGAGGAAAAAGCTGCTTACCCATGGTAGAGTCGTCTATCAAATATTAAAAGCTGTCCAATCTATAAACCAAAGCATTTTGTCTGAAATGCCTGTGCCAACTGTTGTTAAGGAGGCAATTTGCAAGTGTGGAAAGACATGCCTGAACGAGAAGTTATACAAGATTTTGATAGGAGAATCAAGCACAGCAGAGAACATGCTCAATGCTCTTAATCTAAAAACCCAACATAGTGTACTTGAGGTTATTAACAGGTTGGAAGCTGCGATGTTTGCATGGAAAGAGAAAATTATGGAGCAAGATGGTGGAAAATCTCCAATTCGAACATCATGGTCATCTTTAATTAAGGACTTGATATCAGAGAGGGAGAAGATGGAGCTGCTCTTGGACCGAGCCGAAACCCTTCATCAGCTGCTTAAAGTGAGATTTCCAAACCTTCCTCAATCATTTCTTGACGCAAAGAAAGTTCAAAATGGAAAGGATATTGGACATTGCATTATGGAAGCATATTCAAGGGCACTTGGAAACTTGGCTCTTAGCATACTTTCAAGAATAGAAGATATATTACGAGAGGATGCTTTGACAAATCCAAAAACTGCAATAGCAGCAATTGGCTTGCCTGTACTGAGCTGCACTACTTCTCCAGACTTTCAATCCTTCACCATTCAAACGAACAAGTTAGAAGAACAGTCTTATGACTCTCCTTTCGCATTGAGTAGCAATTCAGATGCAGAATTCTCATGCAACGAGGCTAAATCGAGGTCCGTAACGGCAACCCCAAGTTGTGGTCGATCATTGTGCTTGCGCAAGGAGGCCTGCGCGAGTATGTCTCCAAGAAACTCACTTTGA 1686 42.7 MLLMRRGLACCSIDRDASFDFDDQDRITTYDGLESCILNHQTYENESSTSRGDECASESMEDYDSSCSSSKDASGSFSFKWLPTKKDEHPIAEWDESESPPHFHYREKPSKSVQVSDVDAMKEKYAKLLLGEDVTGGKKGLTTAQALSNAITNLAVTIFGELWKLEPLHEERKAKWQREMSWLLSPTNYMVELIPTKQNGANGGILEIMTPKIRRDIHMNLPALQKLDSMLIDTLDSMVNTEFWYVEGGSRAEGRSKSGSNSKKWWLPSPQMPPSGLSEAERKKLLTHGRVVYQILKAVQSINQSILSEMPVPTVVKEAICKCGKTCLNEKLYKILIGESSTAENMLNALNLKTQHSVLEVINRLEAAMFAWKEKIMEQDGGKSPIRTSWSSLIKDLISEREKMELLLDRAETLHQLLKVRFPNLPQSFLDAKKVQNGKDIGHCIMEAYSRALGNLALSILSRIEDILREDALTNPKTAIAAIGLPVLSCTTSPDFQSFTIQTNKLEEQSYDSPFALSSNSDAEFSCNEAKSRSVTATPSCGRSLCLRKEACASMSPRNSL 561
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 27510686 27513709 - Bma007804.1 Bma12g00627 92053

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma12g00627 561 PANTHER ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 14 21 552 - -
Bma12g00627 561 MobiDBLite consensus disorder prediction 251 277 - -
Bma12g00627 561 Gene3D PRONE domain, subdomain 1 347 481 - -
Bma12g00627 561 Gene3D PRONE domain, subdomain 1 109 346 - -
Bma12g00627 561 PANTHER ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 1 21 552 IPR038937 GO:0005085
Bma12g00627 561 MobiDBLite consensus disorder prediction 254 268 - -
Bma12g00627 561 Coils Coil 394 414 - -
Bma12g00627 561 ProSiteProfiles PRONE domain profile. 108 481 IPR005512 GO:0005085
Bma12g00627 561 Pfam PRONE (Plant-specific Rop nucleotide exchanger) 116 475 IPR005512 GO:0005085
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma12g00627 - - - qsu:112039276 706.827
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g00627 Bma-Chr12:27510686 Bma03g00152 Bma-Chr3:1153059 1.02E-106 dispersed
Bma12g00627 Bma-Chr12:27510686 Bma12g00631 Bma-Chr12:27575330 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g942 . . . . . Bpe07g00049 . . . . . . . . . . Cpe02g00587 . . . . . . . . . . . . . . . . Cone6ag0886 Cone9ag0890 . . . . Blo03g00905 . . . . . . Bma12g00627 . . . . . . . . Cpe06g00592 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003226 0 5 2 2 2 0 2 1 0 1 1 1 2 2 1 2 1 2 2 1 1 1 1 1 1 1 1 9 2 1 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma12g00627 Bma_Chr12 FPKM 2.810997 2.684489 7.228122 6.952213 1.404392 1.261184 1.653851 4.886856 5.511756 4.751477